DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment onecut and Cux1

DIOPT Version :9

Sequence 1:NP_001259065.1 Gene:onecut / 45816 FlyBaseID:FBgn0028996 Length:1081 Species:Drosophila melanogaster
Sequence 2:XP_017176143.1 Gene:Cux1 / 13047 MGIID:88568 Length:1637 Species:Mus musculus


Alignment Length:1290 Identity:241/1290 - (18%)
Similarity:405/1290 - (31%) Gaps:466/1290 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QELVEDASEFITVGHHSERPSQSSQQPNSG--QDLTMSMQDIISCPVKHRT-----CSASGSGSA 72
            |:|..|.:|       .||..|.:|...:.  ::....:|.:.:...|.||     .:.....:.
Mouse   262 QKLQNDFAE-------KERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRTELFDLKTKYDEETT 319

  Fly    73 SGSDSVVMVIDALGQGNR-----QSAYQIVPQQLQQRNMPLPFGLLERDRQHMQHGREVNTSPVD 132
            :.:|.:.|::..|.:.|:     |...:.:.:||...|            ..:|...::..:|  
Mouse   320 AKADEIEMIMTDLERANQRAEVAQREAETLREQLSSAN------------HSLQLASQIQKAP-- 370

  Fly   133 FVSSDINLDGLTVDADVSQTDHSQETA----VKQEQKLLIVQSKSQD----QSHRRIRMLV-DVS 188
                    |.|.||...|.:..:...:    ..|||.:.::...|.:    ...|.|..|| ||.
Mouse   371 --------DVLQVDGSPSSSPRASAVSSLLCPSQEQAIEVLTRSSLEVELAAKEREIAQLVEDVQ 427

  Fly   189 SVNSGLGVHVDDMDEISSDGVGCDDEGVTLSHQHLLEQEEQFGLTSHHPHLQPHTQIIHGLHQRS 253
            .:.:.|    ..:.|.|:..:...::.:...:..|.:.||:....:.:..::.....:..:    
Mouse   428 RLQASL----TKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSM---- 484

  Fly   254 THSEMGLDNGHGEVLSVIVHSQDSDKE----DCEEN------------DDGDAEGDLENEDDDER 302
               |.....|.|        :|||.|.    ..|:|            .:.|..|....:..|:.
Mouse   485 ---EFAPSEGAG--------TQDSTKPLEVLLLEKNRSLQSENATLRISNSDLSGSARRKGRDQP 538

  Fly   303 DSR-------SREQLLSHSSYQTLTSVN--DRLSSPGFSQTSYATLTPIQPLPPISTMSEKFA-- 356
            :||       |....|..::.:.:::.|  ...|..|.||..:::......||..||  .|||  
Mouse   539 ESRRPGPLPASPPPQLPRNTGEQVSNTNGTHHFSPAGLSQDFFSSNLASPSLPLAST--GKFALN 601

  Fly   357 -----------YSGHISGGDSGDT----------------------DVNG--------DGAG--- 377
                       ||..:....|..|                      ||||        :.||   
Mouse   602 SLLQRQLMQSFYSKAMQEAGSTSTIFSTGPYSTNSISSPSPLQQSPDVNGMAPSPSQSESAGSIS 666

  Fly   378 -GGVVEVGEVTNQSSEATGTVSISSGNATSSVCSNNDCSSFSALSMPIGS---GHLGLGVLSGVQ 438
             |..::..|:..|..|              .:..:|           ||.   ||..||:..|..
Mouse   667 EGEEIDTAEIARQVKE--------------QLIKHN-----------IGQRIFGHYVLGLSQGSV 706

  Fly   439 S-------PFSS--------YEKLSSMISPPPNNYLVSCDLHSSVSGRVINSSHLQLSHNGNKKE 488
            |       |::.        :.|:...:|...|...:     .|:.||          ...|..:
Mouse   707 SEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILAL-----RSIQGR----------QRENPGQ 756

  Fly   489 SGTHEHTHRPADVNGGKFSYTGHISRGDSVDNDVNGEKFSFSDHISGGDSGD----EDANREKFI 549
            |........|...||.:.:.|..|...:                 :|.|...    |.|.||   
Mouse   757 SLNRLFQEVPKRRNGSEGNITTRIRASE-----------------TGSDEAIKSILEQAKRE--- 801

  Fly   550 YSDHISEGENGPDVNSGTNWLQMHSEREVRLHMPVPAELEARFHISSERRTRLNVPPARGSLSRH 614
                :...:....|.:.:.....:|:..:|               |..::.|..:...:.:|...
Mouse   802 ----LQVQKTAEPVQTSSTSSSGNSDDAIR---------------SILQQARREMEAQQAALDPA 847

  Fly   615 LAPNAPICPADWKADDWKHSNAGVVSLTADM-PVVVSLTPTP----------------------- 655
            |.| ||:...|......||.:|..:|..:.. |:.:||..||                       
Mouse   848 LKP-APLSQPDLTILTPKHLSASPMSTVSTYPPLAISLKKTPAAPETSTAALPSAPALKKEAQDV 911

  Fly   656 ----PPLRDDSVSGIKQNERS-------------SPGHREQYFLDKSQEPSSVVADQCSPGINGT 703
                ||...|:..|:.:..:|             ||...|:..|..|:|..:...........|:
Mouse   912 PTLDPPGSADAAQGVLRPMKSELVRGSTWKDPWWSPIQPERRNLTSSEETKADETTASGKERAGS 976

  Fly   704 PQSVCVIHQ-QSPSALGNGFQSSSQQAKVSSCASP---KGTVSSGGAVSNRIANSSDM------- 757
            .|......| |.|||      |:....:..|..||   ...:|..||..:....:|.:       
Mouse   977 SQPRAERSQLQGPSA------SAEYWKEWPSAESPYSQSSELSLTGASRSETPQNSPLPSSPIVP 1035

  Fly   758 ----------------------EEINTKDLAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLR 800
                                  :|::|.:|.:::..:|.:..|.|.||.::||..|||::||:|.
Mouse  1036 MAKPAKPSVPPLTPEQYEVYMYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS 1100

  Fly   801 NPKPWSKL-KSGRETFRRMYKWL---------------QEPEFQRMSALR-------MAAAQIPQ 842
            .||||||| :.|||.|.||..||               |.|....:::|:       :::...|:
Mouse  1101 RPKPWSKLTQKGREPFIRMQLWLNGELGQGVLPVQGQQQGPVLHSVASLQDPLQQGCVSSESTPK 1165

  Fly   843 ---------RAPLSSGMSLGSATG------PSGST---GTIPTDLDPHGGPTMIQNPL------- 882
                     .:|:||..|:.|.|.      |:..|   |..|...||....:....||       
Mouse  1166 TSASCSPAPESPMSSSESVKSLTELVQQPCPAIETSKEGKPPEPSDPPASDSQPTTPLPLSGHSA 1230

  Fly   883 ---------TNESDSSPASTPVTSVLV------------------GSVVSCRRKEEP-------- 912
                     :.|.|:...:..|..||.                  |||.....:.:|        
Mouse  1231 LSIQELVAMSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKG 1295

  Fly   913 ---------------QIEQM---------------------------------------PQP--- 920
                           .:|::                                       |||   
Mouse  1296 REPFVRMQLWLNDPNNVEKLMDMKRMEKKAYMKRRHSSVSDSQPCEPPSVGIDYSQGASPQPQHQ 1360

  Fly   921 -KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 974
             ||||:|....::..|:..:::...||.:....:|.||.|:.:||.|:|.|.|.|
Mouse  1361 LKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSR 1415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
onecutNP_001259065.1 CUT 756..830 CDD:280527 33/118 (28%)
HOX 920..975 CDD:197696 20/59 (34%)
Cux1XP_017176143.1 SbcC <103..>482 CDD:223496 43/252 (17%)
CUT 667..740 CDD:367059 16/97 (16%)
PHA03247 867..>1050 CDD:223021 33/188 (18%)
CUT 1056..1124 CDD:367059 30/67 (45%)
CUT 1239..1312 CDD:367059 9/72 (13%)
Homeobox 1364..1418 CDD:365835 17/52 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2252
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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