DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment onecut and onecut1.2

DIOPT Version :9

Sequence 1:NP_001259065.1 Gene:onecut / 45816 FlyBaseID:FBgn0028996 Length:1081 Species:Drosophila melanogaster
Sequence 2:XP_002935504.1 Gene:onecut1.2 / 100488409 XenbaseID:XB-GENE-1021674 Length:417 Species:Xenopus tropicalis


Alignment Length:543 Identity:184/543 - (33%)
Similarity:238/543 - (43%) Gaps:188/543 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 HLQLS-HNGNKKESGTHE--HT-----HRPADVNGGKFSYTGHISRGDSVDNDVNGEKFSFSDHI 533
            ::||. .|.....|..||  |:     |.|...:....|.|..:..||          :..|||.
 Frog     2 NVQLGLQNSQDMSSSDHELMHSQGRTLHPPVPRSSLVSSMTSVLDGGD----------YHRSDHH 56

  Fly   534 ----------SGGDSGDEDAN-----------REKFIYSDHISEGENGPDVNSGTNWLQMHSERE 577
                      .||||....||           .:||.:..|......|..:.|.|   .|..:|.
 Frog    57 LAASLHPGIGFGGDSPPASANSYTTLTPLQPLHDKFHHHQHHQCVPVGNVIGSFT---LMREDRG 118

  Fly   578 V----RLHMPVPAELEARFHISSERRTRLNVPPARGSLSRHLAPNAPICPADWKADDWKHSNAGV 638
            :    ..:...|.::.....:||.....|....:.|..|.|||....:....::|..        
 Frog   119 LGPPSNFYSHYPKDISMGQSLSSLPSPNLTTMHSYGHPSGHLANEKMVSGNGFEAHH-------- 175

  Fly   639 VSLTADMPVVVSLTPTPPPLRDDSVSGIKQNERSSPG--HREQYFLDKSQEPSSVVADQCSPGIN 701
             |:.:.:....|...:|||     .||:     .||.  |:..|                   ::
 Frog   176 -SMFSRIDQHFSRELSPPP-----SSGV-----GSPNSMHQHHY-------------------VH 210

  Fly   702 GTPQSVCVIHQQSPSALGNGFQSSSQQAKVSSCASPKGTVSSGGAVSNRIANSSDMEEINTKDLA 766
            ..|:..|   :|:|                     |..|.::  |:||:      :|||||||:|
 Frog   211 HRPEINC---RQNP---------------------PMQTQNT--AISNQ------LEEINTKDVA 243

  Fly   767 QRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMYKWLQEPEFQRMS 831
            |||.||||||||||||||:||||||||||||||||||||||||||||||:||::||||||||||:
 Frog   244 QRIIAELKRYSIPQAIFAERVLCRSQGTLSDLLRNPKPWSKLKSGRETFKRMWRWLQEPEFQRMA 308

  Fly   832 ALRMAAAQIPQRAPLSSGMSLGSATGPSGSTGTIPTDLDPHGGPTMIQNPLTNESDSSPASTPVT 896
            |||:.|                                                           
 Frog   309 ALRLEA----------------------------------------------------------- 314

  Fly   897 SVLVGSVVSCRRKEEPQ--IEQMPQPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGL 959
                     |:|||:.|  .|:...||:.||||||:|||||.|||.|.:|||||:|:|||:||||
 Frog   315 ---------CKRKEQEQSKAERNHVPKRHRLVFTDIQRRTLHAIFHENQRPSKELQITIAQQLGL 370

  Fly   960 EPTTVGNFFMNARRRSMDKWRDD 982
            |.:||.||||||||||:|||.|:
 Frog   371 ELSTVSNFFMNARRRSLDKWMDE 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
onecutNP_001259065.1 CUT 756..830 CDD:280527 65/73 (89%)
HOX 920..975 CDD:197696 41/54 (76%)
onecut1.2XP_002935504.1 CUT 235..303 CDD:367059 61/67 (91%)
HOX 331..386 CDD:197696 41/54 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 92 1.000 Domainoid score I7477
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 305 1.000 Inparanoid score I2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001166
OrthoInspector 1 1.000 - - otm49171
Panther 1 1.100 - - O PTHR14057
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X793
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.060

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