DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment onecut and onecut2

DIOPT Version :9

Sequence 1:NP_001259065.1 Gene:onecut / 45816 FlyBaseID:FBgn0028996 Length:1081 Species:Drosophila melanogaster
Sequence 2:XP_002934489.3 Gene:onecut2 / 100485320 XenbaseID:XB-GENE-485246 Length:463 Species:Xenopus tropicalis


Alignment Length:779 Identity:221/779 - (28%)
Similarity:282/779 - (36%) Gaps:372/779 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 TLSHQHLLEQEEQFGLTSHHPHLQPHTQIIHGLHQRSTHSEMGLDNGHGEVLSVIVHSQDSDKED 281
            :|:..|.....||..::||.||           |.|..|.::...:..    |.:|.|..|..  
 Frog    28 SLASLHGGTSHEQDLISSHSPH-----------HHRRLHQDLTPPSSR----SAMVSSMASIL-- 75

  Fly   282 CEENDDGDAEGDLENEDDDERDSRSREQLLSHSSYQTLTSVNDRLSSPGFSQTS-YATLTPIQPL 345
                   |..|:...|             ||...:..|:...|. |.||...:| |.||||:|||
 Frog    76 -------DGAGEYRPE-------------LSIPLHHALSMPCDS-SPPGMGMSSTYTTLTPLQPL 119

  Fly   346 PPISTMSEKFAYSGH-----------ISGGDSGDTDVNGDGAGGGVVEVGEVTNQSSEATGTVSI 399
            |||||:||||.:..|           :|...||...:..|..|     :..:.|..|...   .:
 Frog   120 PPISTVSEKFHHPHHHPHHHHHHHQRLSANVSGSFTLMRDERG-----IPAMNNLYSPYK---DM 176

  Fly   400 SSGNATSSVCSNNDCSSFSALSMPIGSGHLGLGVLSGVQSPFSSYEKLSSMISPPPNNYLVSCDL 464
            ..|.:.|.:...           |:|:   |||.:...|....:|       .||.::.::|.:.
 Frog   177 GMGQSLSPLAGT-----------PLGN---GLGSIHNTQQSLHNY-------GPPVHDKMLSPNF 220

  Fly   465 HSSVSGRVINSSHLQLSHNGNKKESGTHEHTHRPADVNGGKFSYTGHISRGDSVDNDVNGEKFSF 529
            .                                         ::|..::|||             
 Frog   221 D-----------------------------------------AHTAMLARGD------------- 231

  Fly   530 SDHISGGDSGDEDANREKFIYSDHISEGENGPDVNSGTNWLQMHSEREVRLHMPVPAELEARFHI 594
                                  .|:|.|                                     
 Frog   232 ----------------------QHLSRG------------------------------------- 237

  Fly   595 SSERRTRLNVPPARGSLSRHLAPNAPICPADWKADDWKHSNAGVVSLTADMPVVVSLTPTPPPLR 659
                   |..||:  ::..||                                            
 Frog   238 -------LGTPPS--AMMSHL-------------------------------------------- 249

  Fly   660 DDSVSGIKQNERSSPGHREQYFLDKSQEPSSVVADQCSPGINGTPQSVCVIHQQSPSALGNGFQS 724
                ||:  :..|.|||        :|....|:|..               ..:.||:.|:...|
 Frog   250 ----SGM--HHPSHPGH--------AQTHGPVLASS---------------RDRPPSSSGSQMNS 285

  Fly   725 SSQQAKVSSCASPKGTVSSGGAVSNRIANSSDMEEINTKDLAQRISAELKRYSIPQAIFAQRVLC 789
            |.|                             :||||||::||||:|||||||||||||||||||
 Frog   286 SGQ-----------------------------LEEINTKEVAQRITAELKRYSIPQAIFAQRVLC 321

  Fly   790 RSQGTLSDLLRNPKPWSKLKSGRETFRRMYKWLQEPEFQRMSALRMAAAQIPQRAPLSSGMSLGS 854
            |||||||||||||||||||||||||||||:|||||||||||||||:||                 
 Frog   322 RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAA----------------- 369

  Fly   855 ATGPSGSTGTIPTDLDPHGGPTMIQNPLTNESDSSPASTPVTSVLVGSVVSCRRKE-EPQIEQMP 918
                                                               |:||| ||..::..
 Frog   370 ---------------------------------------------------CKRKEQEPNKDRNN 383

  Fly   919 QPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWRDD 982
            ..||.||||||||||||.|||||.||||||||:||::|||||..||.||||||||||::||:||
 Frog   384 TQKKSRLVFTDLQRRTLFAIFKENKRPSKEMQITISQQLGLELNTVSNFFMNARRRSLEKWQDD 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
onecutNP_001259065.1 CUT 756..830 CDD:280527 67/73 (92%)
HOX 920..975 CDD:197696 44/54 (81%)
onecut2XP_002934489.3 CUT 290..362 CDD:396794 67/71 (94%)
HOX 385..440 CDD:197696 44/54 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 148 1.000 Domainoid score I4427
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 305 1.000 Inparanoid score I2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001166
OrthoInspector 1 1.000 - - otm49171
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X793
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.050

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