DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlnRS and SPAC17A5.15c

DIOPT Version :9

Sequence 1:NP_524841.1 Gene:GlnRS / 45786 FlyBaseID:FBgn0027090 Length:778 Species:Drosophila melanogaster
Sequence 2:NP_593483.1 Gene:SPAC17A5.15c / 2542408 PomBaseID:SPAC17A5.15c Length:716 Species:Schizosaccharomyces pombe


Alignment Length:542 Identity:187/542 - (34%)
Similarity:272/542 - (50%) Gaps:65/542 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 GKVHTRFPPEPNGILHIGHAKAININFGYAAAHDGVCYLRYDDTNPEKEEEKFFLAIKEMVEWLG 329
            |||.|||||||:|.||||||||..:|..:|..:.|...:|:|||||.||..:|..||.|.|..||
pombe   205 GKVVTRFPPEPSGYLHIGHAKAALLNQYFANKYHGKLIVRFDDTNPSKENSEFQDAILEDVALLG 269

  Fly   330 YKPFKITYSSDNFQQLYEWAVVLINKGLAY--------VCHQKAEELKGFNPKPSPWRERPIEES 386
            .||..:||:||....::::.|.:|..|.||        :.|::.|.:      ||..|:||||||
pombe   270 IKPDVVTYTSDYLDTIHQYCVDMIKSGQAYADDTDVETMRHERTEGI------PSKHRDRPIEES 328

  Fly   387 LRLFEDMKRGKIDEGAAT-LRMKVTLE---EGKMDPVAYRIKFISHHRTGSDWCIYPTYDYTHCL 447
            |.:..:|.:|. |.|... :|.|::.|   :...|||.||...:.|||||:.:..|||||:...:
pombe   329 LEILSEMDKGS-DVGLKNCIRAKISYENPNKAMRDPVIYRCNLLPHHRTGTKYRAYPTYDFACPI 392

  Fly   448 CDSLEDITHSLCTKEFQSRRSSYYWLCNALGIYCPVQWEYGRLNMNYALVSKRKIAKLITEQIVH 512
            .||||.:||:|.|.|::.|...|.|:..|:.:.....||:.|:|....|:||||:.:::...:|.
pombe   393 VDSLEGVTHALRTTEYRDRNPLYQWMIKAMNLRKIHVWEFSRMNFVRTLLSKRKLTEIVDHGLVW 457

  Fly   513 DWDDPRLFTLTALRRRGFPAEAINNFCAQMGVTGAQIAVDPAMLEAAVRDVLNVTAPRRLVVL-- 575
            .|||||..|:..:||||...||:..:....|.:...:.:|.....|..:.:::..|||...|.  
pombe   458 GWDDPRFPTVRGVRRRGMTIEALQQYIVSQGPSKNILTLDWTSFWATNKKIIDPVAPRHTAVESG 522

  Fly   576 EPLKVTIKNFPHAAPVQLEVPDFPQNPQQGTHKITLDKVIYIEQGD---FKLEPEKGYRRLAPKQ 637
            :.:|.||.|.| |||...:.|...:||:.|..|......|.|||.|   ||.:.|          
pombe   523 DVVKATIVNGP-AAPYAEDRPRHKKNPELGNKKSIFANEILIEQADAQSFKQDEE---------- 576

  Fly   638 SVGLRHAGLVISVDEIVKDPATGQVVELICTSQPAEQAEKPKAFVQWVSQ-----PIQLEVRLY- 696
             |.|...|... |.||.:| |:|:|..|..........:|.:..|.|::.     |:.|....| 
pombe   577 -VTLMDWGNAY-VREINRD-ASGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYL 638

  Fly   697 ---EQLFKHKNPEDPNEVPGGFLSDISEQSMSVVVAFADRALNQAKVYDKFQFERIGFFSVD-PD 757
               ::|.:.:|.:|       ||:..:|....|   |||..:...|..|..|.||.|::.|| |.
pombe   639 ITKDKLEEGENYKD-------FLTPQTEFHSPV---FADVGIKNLKKGDIIQVERKGYYIVDVPF 693

  Fly   758 TSANHLVFN----RTV---GLK 772
            .....::||    :||   |:|
pombe   694 DGTQAVLFNIPDGKTVNRYGVK 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlnRSNP_524841.1 PLN02859 10..777 CDD:178450 187/542 (35%)
SPAC17A5.15cNP_593483.1 GST_C_family 84..167 CDD:295467
PLN03233 199..707 CDD:178772 183/532 (34%)
GlnRS_core 206..515 CDD:185676 120/315 (38%)
tRNA-synt_1c_C 513..690 CDD:281883 58/200 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0008
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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