DRSC/TRiP Functional Genomics Resources

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Protein Alignment ValRS and IleRS-m

DIOPT Version :9

Sequence 1:NP_001260946.1 Gene:ValRS / 45783 FlyBaseID:FBgn0027079 Length:1055 Species:Drosophila melanogaster
Sequence 2:NP_648837.2 Gene:IleRS-m / 39762 FlyBaseID:FBgn0036569 Length:941 Species:Drosophila melanogaster


Alignment Length:1076 Identity:233/1076 - (21%)
Similarity:400/1076 - (37%) Gaps:285/1076 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 RLKAEKLAKLQAK-------LDKKAAAAPAAGEKKEKPEKRTKEVKEAAVYTAQTAPGEKKDLSG 88
            ||.:.|.||..||       |.|..........|:|:.|:...|.|.|..|..|    |::    
  Fly    12 RLYSMKAAKKDAKKYTDTINLPKTKFPNRLTAAKREEQERLVLENKIAVSYAYQ----EQR---- 68

  Fly    89 ALPDAYSPRYVEAQWYSWWEKEGFFTPEYGRASIDAPNPNGKFVMIIPPPNVTGSLHLGHALTNA 153
                                     ..|.|:.:         ||:...||...|.||:|||:...
  Fly    69 -------------------------LAEKGKPT---------FVLHDGPPYANGQLHMGHAVNKI 99

  Fly   154 IEDAITRYHRMKGRTTLWVPGCDHAGIATQVVVEKLLWRDEKLSRHDLGREKFIERIWDWRREKG 218
            ::|...|.....|:...::||.|..|:..::   |........|..:: |:|  .|.:.|...|.
  Fly   100 LKDITLRQRVAHGQRVNYIPGWDCHGLPIEL---KATSTAPGQSAQEI-RQK--SRAFAWEAIKS 158

  Fly   219 GRIYEQLKSLGSSYDWTR--VAFTMDPKLCRAVTEAFVRLHEEGSIYRSSRLVNWSCTLRSAISD 281
            .:  |:..|.|...:|.:  :..|..|:......|.|..|:|:|.:||..:.|.||.:.|:|:::
  Fly   159 QK--EEFSSWGILANWQKDNIYMTFQPEFIVNQLEMFYNLYEKGLVYRDLKPVYWSPSSRTALAE 221

  Fly   282 IEVDKVEIPGRTFLSIPGYE-DKVEFGVLIKFAY---KVEGSDEEI--IVATTRIETMLGDTAVA 340
            .|::              |: :.:...|.::||.   ..:..|::|  :|.||...|:..:.|:.
  Fly   222 AELE--------------YDANHISPSVYVRFALNPSSFDVKDKQIYALVWTTTPWTLPSNQAIC 272

  Fly   341 VHP-------------QDDRY---------------------KHLHGKFVV-----HPFSTRR-- 364
            .:.             ||:.|                     :||.|:.:.     ||....:  
  Fly   273 YNASLEYVIVRLSDRNQDELYLMASALMADFEANTQLKCEIVQHLSGELLSKLSYNHPIDKEQSN 337

  Fly   365 LPIVCDEFVDMAFGTGAVKITPAHDPNDYEVGKRCNLPFITIFNDDGYIIGDYGEFTGMKRFECR 429
            ||......|..:.|||.|...|||.|.|:.|.....:|.....|::|....:..:|..      .
  Fly   338 LPFFDASHVQDSKGTGLVHTAPAHGPEDFLVSLTQKIPVKCFVNEEGTYTKEAPDFLR------G 396

  Fly   430 KKILEKLKALNLYR---ETLNNPMV---VPICSRSKDVVEPLIKPQWYVSCSDMAASATEAVRSG 488
            |.:|::..:|.|.|   :.:::..:   .||..|:|..|......||:::...:...|.:|:.  
  Fly   397 KSVLDQGNSLVLDRIAEDVVHSSKLEHSYPIDWRTKKPVIIRASEQWFINTEKLKTPAADALE-- 459

  Fly   489 ELKIIP----EHHTKTWYHWMDGIRDWCVSRQLWWGHRIPAYHVSFTDPSLQTG----SSA---- 541
            :::|.|    |...|.....:.....||:|||..||..||..:      |.::|    :||    
  Fly   460 QVEIYPRANAEASKKALLTQLQKRPYWCISRQRAWGVPIPVLY------SRESGKVVLNSALIEH 518

  Fly   542 -------HGSVNDDEQYWIVARSE--AEALTKAAERFGVDASKIVLKQDEDVLDTWFSSGIFPFS 597
                   .||:   :.:|:.:..|  .|.|.:.......|     |.:..|:||.||.||....:
  Fly   519 LCNLLRKEGSI---DFWWVKSVEELVPEHLLRELHHEAKD-----LVKGTDILDIWFDSGSTWSA 575

  Fly   598 VFGWPDQTKDLQTFYPTSLLETGHDILFFWVARMVFFGQKLLGKL------PFKEVYLHPMVRDA 656
            |.| .|:..||       .|| |:|....|      |...||..:      |:|.:::|....|.
  Fly   576 VLG-KDKIADL-------YLE-GYDQFTGW------FQSSLLMSIAARECAPYKALFVHGFTVDE 625

  Fly   657 HGRKMSKSLGNVIDPMDVIRGITLEGLHAQLVGSNLDPREIEKAKAGQKQDYPQGIPECGSDALR 721
            .|.||||||||||.|..:.:                                     :.|:||||
  Fly   626 KGYKMSKSLGNVISPKQITK-------------------------------------KYGTDALR 653

  Fly   722 FALCAYITQARDINLDINRVL--GYRFFCNKLWNATKFALLYFTGSEKFDTELSASAAINQMDAW 784
            :.:.::.||...|.:. :::|  .....| |:....:: |....|.::...:|..::..:.::.:
  Fly   654 WWVASHGTQHMSITVS-DKLLQQAAENLC-KIRGTMRY-LKGVIGEKQSGEKLIRTSDKSYLNRY 715

  Fly   785 ILSRLAAAIEACNTGFESYDFAAATSACYAFWLYDLCDVYLECLKPIFQSGSEEQQTAARRTLYV 849
            :||:|..........:::|::....:....|....:..||:..:|.....|.:.:..|.|:||..
  Fly   716 LLSQLVEFESEVEKLYQAYEYNRVVACVQNFIANQVSAVYVHLIKDRLYCGDDHELLAIRQTLTH 780

  Fly   850 CLDYGLRLLSPFMPFITEE-----------LYQRLPRANPAPSICVASYPSNTSWRSTKIESDVE 903
            |.....:.|.|.:||:.||           .::::.:.||             .|:.||....:.
  Fly   781 CYQQLCKSLWPIVPFLVEESWSYYDTTGGAFHEQIVQTNP-------------EWQDTKATEVIN 832

  Fly   904 FVQKAARIIRSARSDYN-------LPNKVKTEVYIVCTDSVPSEILKRYASDLATISYCSNVVFD 961
            ......|:|.....|.|       :..|.::::          ::|:...|.|......|.:   
  Fly   833 AAFDVKRLINQQAGDVNTWHLAVTIKGKERSQL----------DLLRELHSPLGESVSNSEL--- 884

  Fly   962 SPAPQGCAILTVTGQCEVHLLLKGLVEADKEIAKLQ 997
                  |.||.|.   .|.||.....:.|..::|||
  Fly   885 ------CEILQVG---SVTLLQSHNSDLDIALSKLQ 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ValRSNP_001260946.1 PTZ00419 80..1053 CDD:240411 216/1020 (21%)
ValRS_core 129..736 CDD:185677 162/688 (24%)
tRNA-synt_1_2 307..436 CDD:290334 37/174 (21%)
Anticodon_Ia_Val 736..873 CDD:153416 26/149 (17%)
Val_tRNA-synt_C 978..1053 CDD:287436 7/20 (35%)
IleRS-mNP_648837.2 ileS 26..938 CDD:235588 226/1062 (21%)
nt_trans 75..>211 CDD:294020 38/152 (25%)
nt_trans <434..658 CDD:294020 71/291 (24%)
Anticodon_Ia_Ile_BEm 668..842 CDD:153414 32/189 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446756
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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