DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ValRS and ValRS-m

DIOPT Version :10

Sequence 1:NP_001260946.1 Gene:ValRS / 45783 FlyBaseID:FBgn0027079 Length:1055 Species:Drosophila melanogaster
Sequence 2:NP_648268.1 Gene:ValRS-m / 39023 FlyBaseID:FBgn0035942 Length:994 Species:Drosophila melanogaster


Alignment Length:1009 Identity:380/1009 - (37%)
Similarity:554/1009 - (54%) Gaps:112/1009 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 KDLSGALPDA--YSPRYVEAQWYSWWEKEGFFTPEYGRASIDAPNPN----GKFVMIIPPPNVTG 142
            ||.:..||.|  |.|:.||   .::||:      |:.:|::...:.:    |.:.|::|||||||
  Fly    31 KDAANELPLAAGYQPQPVE---NAYWER------EHRQANLPKASASSCKRGTYRMLLPPPNVTG 86

  Fly   143 SLHLGHALTNAIEDAITRYHRMKGRTTLWVPGCDHAGIATQVVVEKLLWRDEKLSRHDLGREKFI 207
            :|||||||...::|.|.|.....|....||||.||||||||||||:.:...:..:||:|||..|:
  Fly    87 NLHLGHALMATVQDVIARQREQLGYQVDWVPGTDHAGIATQVVVERTIAASQAKTRHELGRSAFL 151

  Fly   208 ERIWDWRREKGGRIYEQLKSLGSSYDWTRVAFTMDPKLCRAVTEAFVRLHEEGSIYRSSRLVNWS 272
            :.:|.|:.|||..|.:.|:.||...:|.|..||||.:...||..||.||.|||.|.|.:.:|||.
  Fly   152 DEVWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERLFEEGLIQRRNSVVNWC 216

  Fly   273 CTLRSAISDIEVDKVEIPGRTFLSIPGYEDKVEFGVLIKFAYKV-------EGSDEEIIVATTRI 330
            ..|||||||||||.|||.....:|:|||:.||.||.:..|||.|       :||.|||:|:|||.
  Fly   217 TALRSAISDIEVDSVEITEPVEISVPGYDHKVLFGRMYDFAYHVVDGEALPDGSVEEIVVSTTRP 281

  Fly   331 ETMLGDTAVAVHPQDDR---YKHLHGKFVVHPFSTRRLPIVCDEFVDMAFGTGAVKITPAHDPND 392
            ||:|||.||||||.|.|   |:::....:.|||....:|:|.|..||..|||||||||||||..|
  Fly   282 ETILGDVAVAVHPLDPRYAKYRNIDQVKLKHPFRDDTIPLVFDITVDQEFGTGAVKITPAHDKFD 346

  Fly   393 YEVGKRCNLPFITIFNDDGYIIGDYGEFTGMKRFECRKKILEKLKALNLYRETLNNPMVVPICSR 457
            :|:..|..|....:|.:.|.::..|.|:.|:.|||.|..|:.:|:.::|.|:..::.|.:|||||
  Fly   347 FELATRHKLEPRQVFTETGLVVDAYSEYKGIPRFEARDLIVNRLEEMDLLRQVRSHTMQLPICSR 411

  Fly   458 SKDVVEPLIKPQWYVSCSDMAASATEAVRSGELKIIPEHHTKTWYHWMDGIRDWCVSRQLWWGHR 522
            ||||:|.:|.|||::.|.|:|..|...:.||.|:|:|.:....|..|:...||||:||||||||:
  Fly   412 SKDVIEYMILPQWFLKCKDLAKDALSELHSGRLQILPPNFETEWERWLQDSRDWCISRQLWWGHQ 476

  Fly   523 IPAYHVSFTDPSLQTGSSAHGSVNDDEQYWIVARSEAEALTKAAERFGVDASKIVLKQDEDVLDT 587
            :|||.|..:..:.|               |:.|..|..|..||....|  :.:..||:|.|||||
  Fly   477 VPAYEVIDSQGNSQ---------------WVAALDEKTARQKAMRLIG--SEEFTLKRDPDVLDT 524

  Fly   588 WFSSGIFPFSVFGWPDQTKDLQTFYPTSLLETGHDILFFWVARMVFFGQKLLGKLPFKEVYLHPM 652
            ||||.:.|||..|||:::  .:..||..:::|||||:|||||||:..|.||.|:.||:.:.|:.:
  Fly   525 WFSSSLLPFSTAGWPEES--YKERYPLDIMQTGHDIIFFWVARMMMLGLKLTGEAPFQRILLNGI 587

  Fly   653 VRDAHGRKMSKSLGNVIDPMDVIRGITLEGLHAQLVGS----NLDPREIEKAKAGQKQDYPQGIP 713
            |.||||||||||:||::.|..|::|.:||.|.|.|..|    .:.|.|::.:..|..|.:|.||.
  Fly   588 VCDAHGRKMSKSIGNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKASTIGMTQMFPNGIQ 652

  Fly   714 ECGSDALRFALCAYITQARDINLDINRVLGYRFFCNKLWNATKFALLYFTGSEK--------FDT 770
            |||:|||||.|.::..::..|:.|:|.....:.|.||:|.|.:|.|    ||.|        |:|
  Fly   653 ECGTDALRFTLMSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTL----GSAKGLGISLHQFET 713

  Fly   771 ELSASAAINQMDAWILSRLAAAIEACNTGFESYDFAAATSACYAFWLYDLCDVYLECLKPIFQSG 835
            ....:..:  .|.||:.|||..:..|:..:.:|:|..||:|...|:...|||.|||..||...:.
  Fly   714 LEGVNLGL--WDRWIVGRLAETLSVCSQSYSNYNFHLATAALKTFFYQYLCDTYLETTKPAIGNR 776

  Fly   836 SEEQQTAARRTLYVCLDYGLRLLSPFMPFITEELYQRLPRANPAPSICVASYPSNTSWRSTKIES 900
            |.:..... .||..||.:||:.::|:.||:..||.|.:| .|....:        :.::..|:|.
  Fly   777 SADAYIHV-GTLTACLSWGLQAMAPYAPFVASELLQHVP-LNIELKL--------SDYKDEKLEE 831

  Fly   901 DVEFVQKAARIIRSARSDYNLPNKVKTEVYIVCTDSVPSEILKRYASDLATISYCSNV---VFDS 962
            :|..:......:|..:|...:..:...::.:...::....:|:|:...:..:|.|.:|   :|| 
  Fly   832 EVNEIVNICHNVRQVKSRNEISKRHHPQLSLFAQNTDSEGVLRRHLPQIKVLSRCEDVELELFD- 895

  Fly   963 PAPQGCAILTVTGQCEVHLLLKGLVEADKEIAKLQKKSDQLVQTVGKLTQ-AIQAADYATKVPA- 1025
                                         |.:|:.|:.... .|.|.|.. .::.:|.....|. 
  Fly   896 -----------------------------ESSKISKQLSYF-STAGALCSFGLKLSDGLDLTPEK 930

  Fly  1026 --EVQEANETKLCESRAEIERIAAAI--ETLKLM 1055
              |:|:||..||.:...|::|....:  |..:||
  Fly   931 RDEMQKANAKKLKKLVTELQRYRMRLDNEAFQLM 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ValRSNP_001260946.1 PTZ00419 80..1053 CDD:240411 378/1005 (38%)
ValRS-mNP_648268.1 PTZ00419 23..989 CDD:240411 380/1009 (38%)

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