DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha1 and Psma3

DIOPT Version :10

Sequence 1:NP_524837.2 Gene:Prosalpha1 / 45780 FlyBaseID:FBgn0263121 Length:244 Species:Drosophila melanogaster
Sequence 2:XP_063117662.1 Gene:Psma3 / 29670 RGDID:61844 Length:258 Species:Rattus norvegicus


Alignment Length:264 Identity:76/264 - (28%)
Similarity:122/264 - (46%) Gaps:37/264 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETV 66
            |.|....:|...:.|||:||::|||||.||: :.:.|.:.::..|..|...:|.|..|.....:.
  Rat     4 SCGHRPQYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 67

  Fly    67 THLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEM 131
            ..||.:.:.:|.|:.|.:||:||....||.||:|||..:||.:|:..|..|:|.....||..:.:
  Rat    68 KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAV 132

  Fly   132 RPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLS-------- 188
            ||.|||.:|.:|....|..:|..||:|...|:..|::|.....|.:.:||.....::        
  Rat   133 RPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEV 197

  Fly   189 -----------EEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTK--I 240
                       ::||.:|.:|.               :|.::|........|.||..|...|  :
  Rat   198 AKIIYIVHDEVKDKAFELELSW---------------VGELTKGRHEIVPKDVREEAEKYAKESL 247

  Fly   241 AEKD 244
            .|:|
  Rat   248 KEED 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha1NP_524837.2 proteasome_alpha_type_6 8..218 CDD:239723 66/228 (29%)
Psma3XP_063117662.1 None

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