DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha1 and Psmb8

DIOPT Version :10

Sequence 1:NP_524837.2 Gene:Prosalpha1 / 45780 FlyBaseID:FBgn0263121 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_034854.2 Gene:Psmb8 / 16913 MGIID:1346527 Length:276 Species:Mus musculus


Alignment Length:225 Identity:46/225 - (20%)
Similarity:88/225 - (39%) Gaps:17/225 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPE-TVTHLFRITKDIGCAMTGRI 84
            |..|:|.|      ...||:|.|.....:||...:.|..:.:.. .:..:..|...:...|:|..
Mouse    63 RNVQIEMA------HGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCA 121

  Fly    85 ADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSM--VLIAYDNEI 147
            ||.:...:....|...:..:.|..:.|....:.::::...|      |.:|.||  ::..:|.: 
Mouse   122 ADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQY------RGMGLSMGSMICGWDKK- 179

  Fly   148 GPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVLAIDFKPNG 212
            ||.:|..|..|.....:..|.|:....|...::..|:.:||.|:|..|....::.....|....|
Mouse   180 GPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGG 244

  Fly   213 IEIGVVSKSDPTFRILDEREIEEHLTKIAE 242
            :......|.|...:: :..::.:.|.|..|
Mouse   245 VVNMYHMKEDGWVKV-ESSDVSDLLYKYGE 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha1NP_524837.2 proteasome_alpha_type_6 8..218 CDD:239723 41/199 (21%)
Psmb8NP_034854.2 proteasome_beta_type_5 73..260 CDD:239730 39/194 (20%)

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