DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-P26 and Trim3

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_038948510.1 Gene:Trim3 / 83616 RGDID:70074 Length:750 Species:Rattus norvegicus


Alignment Length:1085 Identity:227/1085 - (20%)
Similarity:361/1085 - (33%) Gaps:400/1085 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 EDSCSGLMIKDGDK---LCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSSF 207
            ||| .|..::..||   :|.:|..|...|::|.|||.|||.|||..:...:::.|          
  Rat     5 EDS-PGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLS---------- 58

  Fly   208 DGSEHQNRLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNILDLSNLESEHIVCTSCKSKEEAI 272
                           ||||:|.:.|..:|:.||..::.:::::                   ||:
  Rat    59 ---------------CPVCRQTSILPEQGVSALQNNFFISSLM-------------------EAM 89

  Fly   273 SRCNDCANFLCNGCDNAHKYMRCFENHHVVRIEDLTKNVHDKLIIHKPVFCPQH------VSENL 331
            .:..          |.||..    |:.|.:           ..:..:|:.||.|      ..:.:
  Rat    90 QQAP----------DGAHDP----EDPHPL-----------SAVAGRPLSCPNHEGKEPLYHQTM 129

  Fly   332 KYYCFTCQVPTCNDCLLSDHKGSDHHYETATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSA 396
            ::||..|:...|.:|...:|:                                            
  Rat   130 EFYCEACETAMCGECRAGEHR-------------------------------------------- 150

  Fly   397 LTELQSQHDTV--RQQIEDAYKCYKRMLESIKDQMLNELGRLHSDRELKIMDLMQSMENTMGKLQ 459
                  :|.||  |..:|......:|.||:::       |||                       
  Rat   151 ------EHGTVLLRDVVEQHKAALQRQLEAVR-------GRL----------------------- 179

  Fly   460 HAAQFGQRAVDKANSIEFLLLKPIISAQCLNLMEQTPKCDINYQLQFDSKPEMFEQFAREMFGKF 524
                                  |.:||                              |..:.|  
  Rat   180 ----------------------PQLSA------------------------------AIALVG-- 190

  Fly   525 QTDHIDSSPKKLGMTQQLQQQQQQQQQLQQQQHQHQHQVQQQQHHHQQQQQQKQQV--------- 580
                        |::||||:::.:...          |:.......:|..||::|.         
  Rat   191 ------------GISQQLQERKAEALA----------QISAAFEDLEQALQQRKQALVSDLESIC 233

  Fly   581 ---QHQQQQQKLQLQQQQQHQHNSNNLIVGHRGSSSVQG-RLTSAVFSPISLPSSLQSSFDGDTN 641
               |...|.|...|:|.|:|        :|...|.:.|. ||.||       |..|         
  Rat   234 GAKQKVLQTQLDTLRQGQEH--------IGSSCSFAEQALRLGSA-------PEVL--------- 274

  Fly   642 SVMSNFSMMDSPPQPSSQQQLPSAQQQSQQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQQQQQQV 706
                                         ..::..:::.|.:..|...::.|:..|::...:...
  Rat   275 -----------------------------LVRKHMRERLAALAAQAFPERPHENAQLELVLEVDG 310

  Fly   707 LHQPTSAQSMPQQLGQLVAPQGIVQQAGHVNLNAGPGPNISINGLGAGGPPPSFSMLEYNISRLA 771
            |.:..      ..||.|:.    .....|..:..|.|...::    .|.|              |
  Rat   311 LRRSV------LNLGALLT----TSATAHETVATGEGLRQAL----VGQP--------------A 347

  Fly   772 SLTETMPDTLNDALAVGGGAAGPVPNVVAQVPGGSAVTGAAVVGASH-------AHQQQSQAVMP 829
            |||.|..|  .|...|..|:|    .:.|::.|...|. .||....|       .:..:::..:.
  Rat   348 SLTVTTKD--KDGRLVRTGSA----ELCAEITGPDGVR-LAVPVVDHKNGTYELVYTARTEGDLL 405

  Fly   830 ASAVTPTQPI-----TLADILSGDQRALNNLQALAKLGLNNNDFCMPPATSPSLQSLNPIVGGVE 889
            .|.:...||:     .:..:..||                     :||  ||     :.:...|:
  Rat   406 LSVLLYGQPVRGSPFRVRALRPGD---------------------LPP--SP-----DDVKRRVK 442

  Fly   890 DMGLNNFH----AVAAPGTTSVVTGRNKATPMQIRCKF--GSLGTAKGQFNSPHGFCLGVDEEII 948
            ..|....|    ||..|.:.....|:.|..|::....|  ||.|..||:|.:..|........|:
  Rat   443 SPGGPGSHVRQKAVRRPSSMYSTGGKRKDNPIEDELVFRVGSRGREKGEFTNLQGVSAASSGRIV 507

  Fly   949 VADTNNHRIEVFDKMGALKFQFGVAGKEEGQLWYPRKVAVMHNNGKFVVCDRGNERSRMQIFSKC 1013
            |||:||..|:||...|..||:|||.|:..|||..|..||| ..||..:|.|..|.  .:.|||..
  Rat   508 VADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAV-DTNGDIIVADYDNR--WVSIFSPE 569

  Fly  1014 GHFMRKIAIRYIDIVAGLAVTAKGHIVAVDSVSPTVFVISEEGELVRWF---DCSD-YMREPSDI 1074
            |.|..||....:....|:||...|||:.||:.|..||.....|:||..|   ..:| :...|..:
  Rat   570 GKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFV 634

  Fly  1075 AIRD-NDFYVCDFKGHCVAVFQDDGTFLYRI-----GNEKVTCFPNGIDISNAGDVLIGDSHGNR 1133
            |:.: |:..|.||..|.|.|:..||.||::.     ||.:... |.|:.:.:.|::::.|...:|
  Rat   635 AVNNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNA-PTGVAVDSNGNIIVADWGNSR 698

  Fly  1134 FHVACYSREGALQSEFECPHVKVSRCCGLKITSEGYVVTLAKNNH 1178
            ..|  :...|:..|........:....||.:||:|:||.....||
  Rat   699 IQV--FDSSGSFLSYINTSAEPLYGPQGLALTSDGHVVVADAGNH 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 22/74 (30%)
BBOX 321..360 CDD:237988 9/44 (20%)
BBC 369..494 CDD:128778 14/126 (11%)
NHL_brat_like 913..1186 CDD:271329 93/278 (33%)
NHL repeat 936..972 CDD:271329 14/35 (40%)
NHL repeat 983..1025 CDD:271329 16/41 (39%)
NHL repeat 1028..1064 CDD:271329 15/38 (39%)
NHL repeat 1068..1107 CDD:271329 14/44 (32%)
NHL repeat 1112..1151 CDD:271329 8/38 (21%)
NHL repeat 1157..1183 CDD:271329 9/22 (41%)
Trim3XP_038948510.1 RING-HC_TRIM3 19..63 CDD:319682 18/68 (26%)
Bbox_SF 107..159 CDD:412124 13/101 (13%)
BBC 164..290 CDD:128778 38/284 (13%)
IG_FLMN 328..425 CDD:214720 24/121 (20%)
NHL_TRIM2_like 477..750 CDD:271330 91/271 (34%)
NHL repeat 495..534 CDD:271330 16/38 (42%)
NHL repeat 542..581 CDD:271330 16/41 (39%)
NHL repeat 584..620 CDD:271330 15/35 (43%)
NHL repeat 628..668 CDD:271330 13/39 (33%)
NHL repeat 677..717 CDD:271330 8/42 (19%)
NHL repeat 720..746 CDD:271330 9/22 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133242at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.880

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