DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-P26 and Trim42

DIOPT Version :10

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:NP_084495.2 Gene:Trim42 / 78911 MGIID:1926161 Length:723 Species:Mus musculus


Alignment Length:635 Identity:120/635 - (18%)
Similarity:215/635 - (33%) Gaps:203/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 DVTSSSSIGSETSISSTGSTA--IAGPSTLLDDSNSSGLGLVVDVDSNGSSQELSSHGVTELDSL 145
            :||.:...|...||.::..||  :....|.:|:.               .:...|||.|:.|   
Mouse    98 NVTITFRKGRLRSIVTSSKTALRVGSSDTQMDEP---------------KTMPASSHLVSHL--- 144

  Fly   146 EDSCSGLMIKDGDKLCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSSFDGS 210
                          .|.:|:...:...:|.|.|..||.||:.:                     .
Mouse   145 --------------TCPMCNRLRLHSFMLPCNHSLCEKCLRQL---------------------Q 174

  Fly   211 EHQNRLSAVFI-ECPVCKQETPLGPKGIKALPCDYIVTNI--------------LDLSNLESEHI 260
            :|.......|| .||:|.:...:.......||.:|:...:              .|.|   |..|
Mouse   175 KHAEVTENFFILICPMCSRSHCMPYSHQMHLPENYLRGRLTKRYMQQHGYLKWRFDRS---SGPI 236

  Fly   261 VCTSCKSKEEAISRCNDCANFLCNGCDNAHKYMRCFENHHVVRIEDLTKNVHDKLIIHKPVFCPQ 325
            :|..|:::..|..||..|...|||.|..|.......::|  |.::...::..:|:.||       
Mouse   237 LCQVCRTRRIAYKRCVTCRLNLCNDCLKAFHSDVAMQDH--VFVDTSAEDQDEKICIH------- 292

  Fly   326 HVSENLKYYCFTCQVPTCNDCLLSDHKGSDHHYETATVAEQAVRADLEETLSDTLKKADYCNDAG 390
            |.|..:..||.:.....|..|.::.|.|                       .||:...|.|::..
Mouse   293 HPSSRINEYCRSDNQLLCAFCKIAFHNG-----------------------HDTVSLIDACSERS 334

  Fly   391 SNLGSALTELQSQHDTVRQQIED----------AYKCYKRMLESIKDQMLN---ELGRLHSDREL 442
            :.|.||:.:.::    ||.:|::          ::|..|   |:.:.::.|   :|..:..::|.
Mouse   335 AALFSAIAKFKA----VRYEIDNDLMEFNILKSSFKADK---EAKRKEVRNGFLKLRAILQEKEK 392

  Fly   443 KIMDLMQSME-------------NTM--GKLQHAAQFGQRAVDKANSIEFLLLKPIISAQCLNLM 492
            .||:.::::|             .||  .::.....:.:.|:.:...:.||....|:..|....:
Mouse   393 IIMEQIENLEVSRQKEIEKYVYITTMKVNEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEEGI 457

  Fly   493 EQTPKCDINYQLQFDSK---PEMFEQFAREMFGKFQTDHIDSSPKKL---GMTQQLQQQQQQQQQ 551
            :.|.:.|  .||:..|.   |..|.:.:..:...|.|     .|||.   |.:...|.....:..
Mouse   458 QNTFRPD--PQLRLHSLHCIPLDFAELSNAIHELFPT-----GPKKACSSGDSLPSQYPIHSEMM 515

  Fly   552 LQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQQQQHQHNSNNLI----VGHRGSS 612
            :.::.....|....||.:.:                             |::||    ...:|..
Mouse   516 IARKVTFSTHSFGNQQIYQR-----------------------------SSSLISFNTANDKGKM 551

  Fly   613 SVQ--GRLTSAVFSPISLPSSLQS--SFDGDTNSVMSNFSMMDSPPQPSS 658
            .::  ||..||  :|......|.:  |..|:|           .|||.|:
Mouse   552 GLENYGRAQSA--APAKTTDGLYTYWSATGET-----------QPPQSSN 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..232 CDD:473075 15/74 (20%)
RING_Ubox 222..266 CDD:473075 11/57 (19%)
Bbox_SF 261..302 CDD:469587 12/40 (30%)
Bbox2_BRAT-like 318..361 CDD:380856 9/42 (21%)
BBC 369..494 CDD:128778 26/152 (17%)
NHL_brat_like 913..1186 CDD:271329
NHL repeat 936..972 CDD:271329
NHL repeat 983..1025 CDD:271329
NHL repeat 1028..1064 CDD:271329
NHL repeat 1068..1107 CDD:271329
NHL repeat 1112..1151 CDD:271329
NHL repeat 1157..1183 CDD:271329
Trim42NP_084495.2 NosR <4..81 CDD:443108
RING-HC_TRIM42_C-III 139..196 CDD:438240 18/94 (19%)
Bbox_SF 235..280 CDD:469587 14/46 (30%)
Bbox_SF 287..326 CDD:469587 13/68 (19%)
TOPEUc <341..432 CDD:214661 14/97 (14%)
FN3 612..698 CDD:238020
Blue background indicates that the domain is not in the aligned region.

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