DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-P26 and Rnf208

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:NP_789804.2 Gene:Rnf208 / 68846 MGIID:1916096 Length:265 Species:Mus musculus


Alignment Length:254 Identity:61/254 - (24%)
Similarity:80/254 - (31%) Gaps:80/254 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PCPPGIPNLKTVLSDDASNSSVLEDIDVSNTSSSSSSSSSSSSSSGSCSGSGTDTDTGKGSSNVG 80
            ||.|..|.....|:...:..|..|.|                 .:.:|.|   |..|.:|:|:..
Mouse    49 PCFPPAPRPTPTLAPKRAWPSDTEII-----------------VNQACGG---DMPTLEGASHTP 93

  Fly    81 SLDVTSSSSIGSETSISSTGSTAIAGPSTLLDDSNSSGLGLVVDVDSNGSSQELSSHGVTELDSL 145
            .|                        |......|:..|...|..||....:|.:...|.|   :.
Mouse    94 PL------------------------PRRPRKGSSELGFPRVAPVDEVIVNQYVIRPGPT---AS 131

  Fly   146 EDSCSGLMIKDGDKLCKLC----SLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSS 206
            ..|.||.:|......|..|    ::....||:|||||..||.|||.:.          .||....
Mouse   132 APSSSGPVIAGEPLECPTCGHTYNVTQRRPRVLSCLHSVCEQCLQILY----------ESCPKYK 186

  Fly   207 FDGSEHQNRLSAVFIECPVCKQETPL-GPKGIKALPCDYIVTNILDLSNLESEHIVCTS 264
                         ||.||.|.:||.| ...|:.||     ..|...||.|..|.:...|
Mouse   187 -------------FISCPTCHRETVLFTDYGLAAL-----AVNTSILSRLPPEALTAPS 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 21/75 (28%)
BBOX 321..360 CDD:237988
BBC 369..494 CDD:128778
NHL_brat_like 913..1186 CDD:271329
NHL repeat 936..972 CDD:271329
NHL repeat 983..1025 CDD:271329
NHL repeat 1028..1064 CDD:271329
NHL repeat 1068..1107 CDD:271329
NHL repeat 1112..1151 CDD:271329
NHL repeat 1157..1183 CDD:271329
Rnf208NP_789804.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 83..106 6/46 (13%)
RING-HC_RNF208 144..197 CDD:319473 21/75 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489543at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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