DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-P26 and trim3a

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_686295.4 Gene:trim3a / 562489 ZFINID:ZDB-GENE-080522-4 Length:774 Species:Danio rerio


Alignment Length:1081 Identity:219/1081 - (20%)
Similarity:369/1081 - (34%) Gaps:372/1081 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 EDSCSGLMIKDGDK---LCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSSF 207
            |...:..:::..||   :|.:|......|::|.|||.|||.|||..:...:::.|          
Zfish     9 ESGSTSPVVRQIDKQFLVCSICLEHYHNPKVLPCLHTFCERCLQNYIPPQSLTLS---------- 63

  Fly   208 DGSEHQNRLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNILDLSNLESEHIVCTSCKSKEEAI 272
                           ||||:|.:.|..||:.||..::.:||::::...|.:   ||    :.||.
Zfish    64 ---------------CPVCRQTSILPEKGVAALQNNFFITNLMEVLQREQD---CT----RSEAS 106

  Fly   273 SRCNDCANFLCNGCDNAHKYMRCFENHHVVRIEDLTKNVHDKLIIHKPVFCPQHVSENLKYYCFT 337
            |           |.::|                       .......|:.||.|..:.:::||.:
Zfish   107 S-----------GLESA-----------------------GAATYAPPLSCPNHEGKVMEFYCES 137

  Fly   338 CQVPTCNDCLLSDHKGSDHHYETATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSALTELQS 402
            |:...|.:|...:|:      |..||           .|.|.|::..             ..|::
Zfish   138 CETAMCLECTEGEHR------EHVTV-----------PLRDVLEQHK-------------AALKN 172

  Fly   403 QHDTVRQQIEDAYKCYKRMLESIKDQMLNELGRLHSDRELKIMDLMQSMENTMGKLQHAAQFGQR 467
            |.|.:|.::       .::..:|  :::||:.:..:||:   .:.:..:.||..:|:.|..  ||
Zfish   173 QLDAIRNRL-------PQLTAAI--ELVNEISKQLTDRK---NEAVTEISNTFEELEKALH--QR 223

  Fly   468 AVDKANSIEFLLLKPIISAQCLNLMEQTPKCDINYQLQFDSKPEMFE-QFAREMFGKFQTDHIDS 531
            .......:|.:                   |        .:|.::.: |.|..|.||   ::|.|
Zfish   224 KTTLITDLENI-------------------C--------STKQKVLQGQLAALMQGK---ENIQS 258

  Fly   532 SPKKLGMTQQLQQQQQQQQQLQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQQQQ 596
            |   ...|:                                     |.:.|....:.|.:|:|  
Zfish   259 S---CSFTE-------------------------------------QALNHGSPTEVLLVQKQ-- 281

  Fly   597 HQHNSNNLIVGHRGSSSVQGRLTSAVFSPISLPSSLQSSFDGDTNSVMSNFSMMDSPPQPSSQQQ 661
                     :|.|     .|.|....|                             |.||     
Zfish   282 ---------MGER-----MGALARHAF-----------------------------PEQP----- 298

  Fly   662 LPSAQQQSQQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQQQQQQVLHQPTSAQSMPQQLGQLVAP 726
                                       .:..|...||:.:..::.:          |.||.|:..
Zfish   299 ---------------------------HENGHLDCQVETEGLRRSI----------QNLGVLLTT 326

  Fly   727 QGIVQQAGHVNLNAGPGPNISINGLGAGGPPPSFSMLEYNISRLASLTETMPDTLNDALAVGGGA 791
            ..:    ||.::..|.|...::                  :.:..::|.|..|...:.:..|..|
Zfish   327 SSV----GHTSVATGEGLRHAV------------------VGQNTTVTVTTKDKDGELVKTGNAA 369

  Fly   792 AGPVPNVVAQVPGGSA------VT----GAAVVGAS-HAHQQQSQAVMPASAVTPTQPITLADIL 845
                  :.||:.|...      ||    |...:|.: .:..:.|.:|:.........|..|..:.
Zfish   370 ------LRAQISGADGGVTETDVTDNKNGTYEIGYTLRSEGEFSFSVLLYGRHVRGSPFRLRAVK 428

  Fly   846 SGD-QRALNNLQALAKLGLNNNDFCMPPATSPSLQSLNPIVGGVEDMGLNNFHAVAAPGTTSVVT 909
            :.| .::.::::...|              ||.        ||....|.....||..| ::...|
Zfish   429 ACDAPQSPDDVKRRVK--------------SPG--------GGGGAGGHVRQKAVRRP-SSMYST 470

  Fly   910 GRNKATPMQIRCKF--GSLGTAKGQFNSPHGFCLGVDEEIIVADTNNHRIEVFDKMGALKFQFGV 972
            .:.|..|::....|  |:.|..:|:|::..|........|:|||:||..|:||...|..|.:|||
Zfish   471 TKKKENPIEDELIFRVGTRGRERGEFSNLQGISTTSSGRIVVADSNNQCIQVFSNDGQFKLKFGV 535

  Fly   973 AGKEEGQLWYPRKVAVMHNNGKFVVCDRGNERSRMQIFSKCGHFMRKIAIRYIDIVAGLAVTAKG 1037
            .|:..|||..|..||| ..||..:|.|..|.  .:.|||..|.|..||....:....|:||...|
Zfish   536 RGRSPGQLQRPTGVAV-DMNGDIIVADYDNR--WLSIFSPDGKFKNKIGAGRLMGPKGVAVDKNG 597

  Fly  1038 HIVAVDSVSPTVFVISEEGELVRWFDC------------------------SDYMREPSDIAIRD 1078
            ||:..|:.:..||:....|:||..|..                        |.....|..:||.:
Zfish   598 HIITADNKACCVFIFQSNGKLVTKFGAKGTSERQFADKSAPNTPTEPKQSKSGPAFSPHFVAINN 662

  Fly  1079 -NDFYVCDFKGHCVAVFQDDGTFLYRI-----GNEKVTCFPNGIDISNAGDVLIGDSHGNRFHVA 1137
             |:..|.||..|.|.|:..||.||::.     ||.:... |.|:.:...|::::.|...:|..| 
Zfish   663 KNEIVVTDFHNHSVKVYNADGEFLFKFGSHGEGNGQFNA-PTGVAVDGNGNIIVADWGNSRIQV- 725

  Fly  1138 CYSREGALQSEFECPHVKVSRCCGLKITSEGYVVTLAKNNH 1178
             :...|:..|........:....||.:||:|:|......||
Zfish   726 -FDSSGSFLSYINTTADPLYGPQGLALTSDGHVAVADSGNH 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 21/74 (28%)
BBOX 321..360 CDD:237988 9/38 (24%)
BBC 369..494 CDD:128778 19/124 (15%)
NHL_brat_like 913..1186 CDD:271329 88/298 (30%)
NHL repeat 936..972 CDD:271329 13/35 (37%)
NHL repeat 983..1025 CDD:271329 16/41 (39%)
NHL repeat 1028..1064 CDD:271329 13/35 (37%)
NHL repeat 1068..1107 CDD:271329 15/44 (34%)
NHL repeat 1112..1151 CDD:271329 8/38 (21%)
NHL repeat 1157..1183 CDD:271329 8/22 (36%)
trim3aXP_686295.4 RING 27..70 CDD:238093 18/67 (27%)
BBOX 118..159 CDD:197662 13/57 (23%)
BBC 166..291 CDD:128778 36/237 (15%)
IG_FLMN 333..429 CDD:214720 18/119 (15%)
Filamin 333..423 CDD:279024 17/113 (15%)
NHL_TRIM2_like 481..774 CDD:271330 86/291 (30%)
YncE 496..>765 CDD:225926 80/274 (29%)
NHL repeat 499..538 CDD:271330 15/38 (39%)
NHL repeat 546..585 CDD:271330 16/41 (39%)
NHL repeat 588..625 CDD:271330 13/36 (36%)
NHL repeat 632..693 CDD:271330 15/60 (25%)
NHL repeat 699..741 CDD:271330 8/44 (18%)
NHL repeat 744..770 CDD:271330 8/22 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133242at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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