DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mei-P26 and trim3b

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_005155434.1 Gene:trim3b / 555391 ZFINID:ZDB-GENE-070112-1132 Length:772 Species:Danio rerio


Alignment Length:1070 Identity:212/1070 - (19%)
Similarity:363/1070 - (33%) Gaps:366/1070 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 MIKDGDK---LCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSSFDGSEHQN 214
            :::..||   :|.:|......|::|.|||.|||.|||..:...:::.|                 
Zfish    16 VVRQIDKQFLVCSICLDHYHNPKVLPCLHTFCERCLQNYIPPQSLTLS----------------- 63

  Fly   215 RLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNILDLSNLESEHIVCTSCKSKEEAISRCNDCA 279
                    ||||:|.:.|..||:.||..::.:||::::...:||      | |:.||.|.....:
Zfish    64 --------CPVCRQTSILPEKGVAALQNNFFITNLMEVLQRDSE------C-SRPEACSVLESVS 113

  Fly   280 NFLCNGCDNAHKYMRCFENHHVVRIEDLTKNVHDKLIIHKPVFCPQHVSENLKYYCFTCQVPTCN 344
            .....                                  ||:.||.|..:.:::||.:|:...|.
Zfish   114 AAAAG----------------------------------KPLSCPNHEGKVMEFYCESCETAMCL 144

  Fly   345 DCLLSDHKGSDHHYETATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSALTELQSQHDTVRQ 409
            :|...:|:                                                  :|.||  
Zfish   145 ECTEGEHR--------------------------------------------------EHVTV-- 157

  Fly   410 QIEDAYKCYKRMLESIKDQMLNELGRLHSDRELKIMDLMQSMENTMGKLQHAAQFGQRAVDKANS 474
            .:.|..:.:|.:|::..|.:.|.|.:|.:..|         |.|.:.|     |..:|..:..|.
Zfish   158 PLRDVLEQHKAVLKNQLDAIRNRLPQLTAAIE---------MVNEISK-----QLTERKNEAVNE 208

  Fly   475 IEFLLLKPIISAQCLNLMEQTPKCDINYQLQFDSKPEMFEQFAREMFGKFQTDHIDSSPKKLGMT 539
            |..                                  .||:..|.:           ..:|..:.
Zfish   209 INM----------------------------------TFEELERAL-----------HQRKAALI 228

  Fly   540 QQLQQQQQQQQQLQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQQQQHQHNSNNL 604
            ..|:.....:|::.|.  |....:|.::|........:|.:.|....:.|.:|:|...:      
Zfish   229 TDLENICSTKQKVLQA--QLSSLLQGKEHIQSSCSFTEQALSHGSATEVLLVQKQMSER------ 285

  Fly   605 IVGHRGSSSVQGRLTSAVFSPISLPSSLQSSFDGDTNSVMSNFSMMDSPPQPSSQQQLPSAQQQS 669
                                                   :|..:..|.|.:|             
Zfish   286 ---------------------------------------VSALACHDFPERP------------- 298

  Fly   670 QQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQQQQQQVLHQPTSAQSMPQQLGQLVAPQGIVQQAG 734
                               .:..|...|::.:..::.:          |.||.|:....:    |
Zfish   299 -------------------HENAHLDCQIETEGLRRSI----------QNLGVLLTTGAV----G 330

  Fly   735 HVNLNAGPGPNISINGLGAGGPPPSFSMLEYNISRLASLTETMPDTLNDALAVGGGAAGPVPNVV 799
            |.::..|.|...::                  :.:..::|.|..|..::.:..|..|      :.
Zfish   331 HTSVATGEGLRHAL------------------VGQHVTVTVTTKDKDSELVRTGNAA------LR 371

  Fly   800 AQVPG--GSAVTGAAVVGASHAHQQQSQAVMPASAVTPTQPITLADILSGDQRALNNLQALAKLG 862
            |::.|  |:.||.|.||...:...:                  :...|.|:...|.:| .|....
Zfish   372 AEIMGQDGAQVTEAEVVDNKNGTYE------------------VGYTLKGEGEYLFSL-ILYGQP 417

  Fly   863 LNNNDF---CMPPATSPSLQSLNPIVGGVEDMGLNNFH----AVAAPGTTSVVTGRNKATPM--Q 918
            :..:.|   .:.|:..|  ||.:.:...|:.......|    ||..| ::...|.:.|..|:  :
Zfish   418 VRGSPFKLRAIKPSDVP--QSPDDVKRRVKSPSGTGGHIRQKAVRRP-SSMYSTTKKKENPIEDE 479

  Fly   919 IRCKFGSLGTAKGQFNSPHGFCLGVDEEIIVADTNNHRIEVFDKMGALKFQFGVAGKEEGQLWYP 983
            :..:.|:.|..||:|.:..|....:...:||||:||..|:||...|..|.:|||.|:..|||..|
Zfish   480 LIYRVGTRGREKGEFTNLQGISASISGRVIVADSNNQCIQVFTNDGQFKARFGVRGRSPGQLQRP 544

  Fly   984 RKVAVMHNNGKFVVCDRGNERSRMQIFSKCGHFMRKIAIRYIDIVAGLAVTAKGHIVAVDSVSPT 1048
            ..||| ..||..:|.|..|.  .:.|||..|.|..||....:....|:||...|||:|||:.:..
Zfish   545 TGVAV-DTNGDVIVADYDNR--WISIFSPDGKFKNKIGAGRLMGPKGVAVDRNGHIIAVDNKACC 606

  Fly  1049 VFVISEEGELVRWF----------------DCSDYMR--------EPSDIAIRD-NDFYVCDFKG 1088
            ||:....|:||..|                .|:...:        .|..:|:.: |:..|.||..
Zfish   607 VFIFQSNGKLVTKFGARGTSDRQFAEKSGSKCALEQKFSKSGPGFSPHFVAVNNKNEIVVTDFHN 671

  Fly  1089 HCVAVFQDDGTFLYRI-----GNEKVTCFPNGIDISNAGDVLIGDSHGNRFHVACYSREGALQSE 1148
            |.|.|:..||.||::.     ||.:... |.|:.:...|::::.|...:|..|  :...|:..|.
Zfish   672 HSVKVYSADGEFLFKFGSHGEGNGQFNA-PTGVAVDVNGNIIVADWGNSRIQV--FDSAGSFLSY 733

  Fly  1149 FECPHVKVSRCCGLKITSEGYVVTLAKNNH 1178
            .......:....||.:||:|:||.....||
Zfish   734 INTSADPLYGPQGLALTSDGHVVVADSGNH 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 21/74 (28%)
BBOX 321..360 CDD:237988 9/38 (24%)
BBC 369..494 CDD:128778 18/124 (15%)
NHL_brat_like 913..1186 CDD:271329 90/298 (30%)
NHL repeat 936..972 CDD:271329 13/35 (37%)
NHL repeat 983..1025 CDD:271329 16/41 (39%)
NHL repeat 1028..1064 CDD:271329 15/51 (29%)
NHL repeat 1068..1107 CDD:271329 14/52 (27%)
NHL repeat 1112..1151 CDD:271329 8/38 (21%)
NHL repeat 1157..1183 CDD:271329 9/22 (41%)
trim3bXP_005155434.1 RING-HC_TRIM3 24..68 CDD:319682 17/68 (25%)
RING-HC finger (C3HC4-type) 27..67 CDD:319682 16/64 (25%)
BBOX 118..159 CDD:197662 14/126 (11%)
BBC 166..291 CDD:128778 30/230 (13%)
Filamin 333..424 CDD:306978 20/133 (15%)
NHL_TRIM2_like 479..772 CDD:271330 88/291 (30%)
NHL repeat 497..536 CDD:271330 15/38 (39%)
NHL repeat 544..583 CDD:271330 16/41 (39%)
NHL repeat 586..623 CDD:271330 15/36 (42%)
NHL repeat 630..691 CDD:271330 14/60 (23%)
NHL repeat 697..739 CDD:271330 8/44 (18%)
NHL repeat 742..768 CDD:271330 9/22 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133242at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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