DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-P26 and Trim2

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_038958566.1 Gene:Trim2 / 361970 RGDID:1310981 Length:809 Species:Rattus norvegicus


Alignment Length:1081 Identity:198/1081 - (18%)
Similarity:342/1081 - (31%) Gaps:408/1081 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 MIKDGDK---LCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSSFDGSEHQN 214
            :::..||   :|.:|..|...|::|.|||.|||.|||..:...:::.|                 
  Rat    73 VVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLS----------------- 120

  Fly   215 RLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNILDL------SNLESEHIVCTSCKSKEEAIS 273
                    ||||:|.:.|..||:.||..::.:||::|:      ||.|...|:.|          
  Rat   121 --------CPVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNGEDPSILQT---------- 167

  Fly   274 RCNDCANFLCNGCDNAHKYMRCFENHHVVRIEDLTKNVHDKLIIHKPVFCPQHVSENLKYYCFTC 338
                 ...:..|                                 ||:.||.|....:::||.:|
  Rat   168 -----VTAVAAG---------------------------------KPLSCPNHDGNVMEFYCQSC 194

  Fly   339 QVPTCNDCLLSDHKGSDH-HYETATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSALTELQS 402
            :...|.:|...:|  ::| ......|.||. :|.|:..|....|:....:.|...:...:.:|.:
  Rat   195 ETAMCRECTEGEH--AEHPTVPLKDVVEQH-KASLQVQLDAVNKRLPEIDSALQFISEIIHQLTN 256

  Fly   403 QHDTVRQQIEDAYKCYKRMLESIKDQMLNEL----GRLHSDRELKIMDLMQSMENTMGKLQHAAQ 463
            |..::...|...:...::.|...|..:|.||    |..|...:.::..|:|..|:    ::..:.
  Rat   257 QKASIVDDIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQES----IKSCSN 317

  Fly   464 FGQRAVDKANSIEFLLLKPIISAQCLNLMEQTPKCDINYQLQFDSKPEMFEQFAREMFGKFQTDH 528
            |..:|::.....|.||:|..:|.:...|.:|          .|...|.             :.|.
  Rat   318 FTAQALNHGTETEVLLVKKQMSEKLNELADQ----------DFPLHPR-------------ENDQ 359

  Fly   529 IDSSPKKLGMTQQLQQQQQQQQQLQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQ 593
            :|...:..|:.:.:                                                   
  Rat   360 LDFIVETEGLKKSI--------------------------------------------------- 373

  Fly   594 QQQHQHNSNNLIVGHRGSSSVQGRLTSAVFSPISLPSSLQSSFDGDTNSVMSNFSMMDSPPQPSS 658
                 ||...::.                                 ||:|.|             
  Rat   374 -----HNLGTILT---------------------------------TNAVAS------------- 387

  Fly   659 QQQLPSAQQQSQQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQQQQQQVLHQPTSAQSMPQQLGQL 723
                                               :.....:..:|.::.||             
  Rat   388 -----------------------------------ETVATGEGLRQTIIGQP------------- 404

  Fly   724 VAPQGIVQQAGHVNLNAGPGPNISINGLGAGGPPPSFSMLEYNISRLASLTETMPDTLNDALAVG 788
                                                           .|:|.|..|...:....|
  Rat   405 -----------------------------------------------MSVTITTKDKDGELCKTG 422

  Fly   789 GGAAGPVPNVVAQVPGGSAVTGAAVVGASHAHQQQSQAVMPASAVTPTQPITLADILSGDQRALN 853
                                                .|.:.|...||...:...:||........
  Rat   423 ------------------------------------NAYLTAELSTPDGSVADGEILDNKNGTYE 451

  Fly   854 NLQALAKLGLNNNDFCM-----------PPATSPSLQS--LNPIVGGVEDMGLNNFHAVAAPGTT 905
            .|..:.|.|    ||.:           .|.....::|  ::|...||:       ..|.:||:.
  Rat   452 FLYTVQKEG----DFTLSLRLYDQHIRGSPFKLKVIRSADVSPTTEGVK-------RRVKSPGSG 505

  Fly   906 SV------------VTGRNKATPMQ--IRCKFGSLGTAKGQFNSPHGFCLGVDEEIIVADTNNHR 956
            .|            .||:.|..|::  :..:.|:.|..||:|.:..|.......:|::||:||..
  Rat   506 HVKQKAVKRPASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQC 570

  Fly   957 IEVFDKMGALKFQFGVAGKEEGQLWYPRKVAVMHNNGKFVVCDRGNERSRMQIFSKCGHFMRKIA 1021
            :::|...|..|.:||:.|:..|||..|..||| |.:|..::.|..|:  .:.|||..|.|..||.
  Rat   571 VQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAV-HPSGDIIIADYDNK--WVSIFSNDGKFKTKIG 632

  Fly  1022 IRYIDIVAGLAVTAKGHIVAVDSVSPTVFVISEEGELVRWF--------DCSDYMREPSDIAIR- 1077
            ...:....|::|...|||:.||:.:..||:....|::|..|        ..:..:..|...|:. 
  Rat   633 SGKLMGPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGTLDGPHFAAVNS 697

  Fly  1078 DNDFYVCDFKGHCVAVFQDDGTFLYRI-----GNEKVTCFPNGIDISNAGDVLIGDSHGNRFHVA 1137
            .|:..:.||..|.|.||..:|.|:.:.     ||.:... |.|:.:.:.|::::.|...:|..| 
  Rat   698 SNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNA-PTGVAVDSNGNIIVADWGNSRIQV- 760

  Fly  1138 CYSREGALQSEFECPHVKVSRCCGLKITSEGYVVTLAKNNH 1178
             :...|:..|........:....||.:||:|:||.....||
  Rat   761 -FDGSGSFLSYINTSADPLYGPQGLALTSDGHVVVADSGNH 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 22/74 (30%)
BBOX 321..360 CDD:237988 10/39 (26%)
BBC 369..494 CDD:128778 26/128 (20%)
NHL_brat_like 913..1186 CDD:271329 79/282 (28%)
NHL repeat 936..972 CDD:271329 10/35 (29%)
NHL repeat 983..1025 CDD:271329 15/41 (37%)
NHL repeat 1028..1064 CDD:271329 12/43 (28%)
NHL repeat 1068..1107 CDD:271329 12/44 (27%)
NHL repeat 1112..1151 CDD:271329 8/38 (21%)
NHL repeat 1157..1183 CDD:271329 9/22 (41%)
Trim2XP_038958566.1 RAD18 68..>170 CDD:227719 35/136 (26%)
RING-HC_TRIM2 81..126 CDD:319681 19/69 (28%)
Bbox2_TRIM2_C-VII 176..217 CDD:380882 11/42 (26%)
BBC 222..348 CDD:128778 26/130 (20%)
IG_FLMN 386..482 CDD:214720 21/243 (9%)
NHL_TRIM2_like 532..809 CDD:271330 77/275 (28%)
NHL repeat 550..589 CDD:271330 11/38 (29%)
NHL repeat 597..636 CDD:271330 15/41 (37%)
NHL repeat 639..675 CDD:271330 12/35 (34%)
NHL repeat 683..727 CDD:271330 11/43 (26%)
NHL repeat 736..776 CDD:271330 8/42 (19%)
NHL repeat 779..805 CDD:271330 9/22 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133242at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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