DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-P26 and madd-2

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:NP_503395.1 Gene:madd-2 / 178619 WormBaseID:WBGene00016539 Length:765 Species:Caenorhabditis elegans


Alignment Length:566 Identity:120/566 - (21%)
Similarity:197/566 - (34%) Gaps:177/566 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 SNTSSSSSSSSSSSSSSGSCSGSGTDTDTGKGSSNVGSLDVTSSSSIGSETSISSTGSTAIAGPS 108
            |.:|.|||:||...|:.|..|     ......||.:      |..|.||.:..|.|.|..::...
 Worm    38 STSSGSSSTSSPRPSTPGILS-----QILSSASSPI------SPQSAGSSSGASDTMSLCVSDNG 91

  Fly   109 TLLDDSNSSGLGLVVDVDSN----GSSQELSS---------HGVTELDSLEDSCSGLMIKDGDKL 160
                |..|..|.:|.:.||.    |.:...||         |.:     |..|.||:.:     :
 Worm    92 ----DHESDKLSVVSETDSGVVGCGRTSRPSSIIGPPLSRLHNI-----LTPSTSGVQL-----V 142

  Fly   161 CKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSA----------SSPN------SCSSSSFDG 209
            |..|.    .|      ..||::  .::||..|..|          :.|:      |||.||  |
 Worm   143 CNSCQ----KP------SYFCDE--NSIVSAPTNLAMQNVIRRYLLAHPDKAFLTPSCSGSS--G 193

  Fly   210 SEHQNRLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNILDLSNLESEHIVCTSCKSKEEAISR 274
            |...::.|                                      :.....|..|:..|..::.
 Worm   194 SSGSSQSS--------------------------------------DEASSQCQLCEGSENRMAN 220

  Fly   275 --CNDCANFLCNGCDNA-HKYMRCFENHHVVRIED----------LTKNVHDKLIIHKPVFCPQH 326
              |..|..:.|..|..| |........|::::..|          ....|.|.|      .|..|
 Worm   221 VFCEQCDIYYCTPCQTALHPARGPLAKHNLLQANDGERKKSSAITTATTVRDLL------RCATH 279

  Fly   327 VSENLKYYCFTCQVPTCNDCLLSDHKGSDHHYETATVAEQAVRADLEETLSDTLKKA-------- 383
            ..|.|..||..|:||.|:.| |.|.:.::|..::..:|.:..:.:|..||....:||        
 Worm   280 PGEGLTMYCLACKVPVCSRC-LQDLRHANHDVQSLPIACKGHKTELSTTLQQLSEKAKTATEEIG 343

  Fly   384 ----------DYCNDAGSNL----GSALTELQSQHDTVRQQIEDAYKCYKRMLESIKDQMLNELG 434
                      :.|||..|:|    ...:.:||.:.:.:.|.:::.....:|:|   |.|::...|
 Worm   344 RLKGLHDVVKNNCNDFKSSLCIQIDQLIEQLQMRKEKLMQHVDEQADNKRRIL---KSQIVKCTG 405

  Fly   435 RLHSDREL--KIMDLMQSMENTMGKLQHAAQFGQRAVDKANSIEFLLLKPIISAQCLNLMEQTPK 497
            :|.....|  ..::.::..:.|:     ..|.....:.::.|:|||..|.         |...|:
 Worm   406 KLTKTSALIQFCIEALKEPDPTV-----YMQISNALLHRSTSLEFLWHKE---------MRTKPE 456

  Fly   498 CDINYQLQFDSKPEMFE----QFAREMFG----KFQTD--HIDSSP 533
            .|..:.|..|:|...:.    .||:...|    :|:.|  .:.|:|
 Worm   457 TDSEFVLNLDTKHLQYTIQTLDFAQLKAGPRGTRFKGDASRVPSAP 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 18/87 (21%)
BBOX 321..360 CDD:237988 14/38 (37%)
BBC 369..494 CDD:128778 28/148 (19%)
NHL_brat_like 913..1186 CDD:271329
NHL repeat 936..972 CDD:271329
NHL repeat 983..1025 CDD:271329
NHL repeat 1028..1064 CDD:271329
NHL repeat 1068..1107 CDD:271329
NHL repeat 1112..1151 CDD:271329
NHL repeat 1157..1183 CDD:271329
madd-2NP_503395.1 RING 7..>33 CDD:214546
zf-B_box 271..313 CDD:279037 16/48 (33%)
BBC 320..445 CDD:128778 23/132 (17%)
FN3 499..590 CDD:238020 2/4 (50%)
SPRY_PRY_TRIM67_9 587..763 CDD:293947
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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