DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mei-P26 and Trim28

DIOPT Version :9

Sequence 1:NP_001356936.1 Gene:mei-P26 / 45775 FlyBaseID:FBgn0026206 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_006228170.1 Gene:Trim28 / 116698 RGDID:620289 Length:861 Species:Rattus norvegicus


Alignment Length:928 Identity:182/928 - (19%)
Similarity:305/928 - (32%) Gaps:339/928 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 SSSSSSSSSSSSSSGSCSGSGTDTDTGKGSSNVGSLDVTSSSSIGSETSISSTGSTAIAGPSTLL 111
            ::|::::::::|::.:.|.:.....:|:||:........||::..|.::.|..|           
  Rat     2 AASAAAATAAASAATAASAASGSPGSGEGSAGGEKRPAASSAAAASASASSPAG----------- 55

  Fly   112 DDSNSSGLGLVVDVDSNGSSQELSSHGVTELDSLEDSCSGLMIKDGDKLCKLCSLRLVM---PRI 173
                           ..|.:|||..|                       |.:|..||..   ||:
  Rat    56 ---------------GGGEAQELLEH-----------------------CGVCRERLRPERDPRL 82

  Fly   174 LSCLHVFCEDCLQAVVSKDTMSASSPNSCSSSSFDGSEHQNRLSAVFIECPVCKQETP------- 231
            |.|||..|..||    ...|.:|::.:....|:.||:         .::||||||:..       
  Rat    83 LPCLHSACSACL----GPATPAAANNSGDGGSAGDGA---------MVDCPVCKQQCYSKDIVEN 134

  Fly   232 --LGPKGIKALPCDYIVTNILDLSNLESEHIVCTSCKSKEEAISRCNDCANFLCNGCDNAHKYMR 294
              :...|.||            .|:.:..:..||||:....|.|.|.:|:..||..|..||:.::
  Rat   135 YFMRDSGSKA------------SSDSQDANQCCTSCEDNAPATSYCVECSEPLCETCVEAHQRVK 187

  Fly   295 CFENHHVVRIEDLTKNVHDKLIIHKPVFCPQHVSENLKYYCFTCQVPTCNDCLLSDHKGSDHHYE 359
             :...|.||.....|....:    :.|:|..|..|.|..:|.:|...||.||.|:.||  ||.|:
  Rat   188 -YTKDHTVRSTGPAKTRDGE----RTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK--DHQYQ 245

  Fly   360 TATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSALTELQSQHDTVRQQIEDAYKCYKRMLES 424
               ..|.||| :..:.|:..:|:          ||.....||.....||..|.......||:...
  Rat   246 ---FLEDAVR-NQRKLLASLVKR----------LGDKHATLQKNTKEVRSSIRQVSDVQKRVQVD 296

  Fly   425 IKDQM------LNELGRLHSDRELKIMDLMQS-MEN---TMGKLQ----HAAQFGQRAVDKANSI 475
            :|..:      ||:.||:..:...|:.:..|. :|.   ||.|:|    |..:|...|::..|:.
  Rat   297 VKMAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNT 361

  Fly   476 EFLLLKPIISAQCLNLMEQ-----TPKCDINYQLQFDSKPEMFEQFAREMFGKFQTDHIDSSPKK 535
            ..||.|.:|..|....::.     .|..::.:|...::..:     :.|.|||            
  Rat   362 ALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTK-----SAEAFGK------------ 409

  Fly   536 LGMTQQLQQQQQQQQQLQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQQQQHQHN 600
                                                                             
  Rat   410 ----------------------------------------------------------------- 409

  Fly   601 SNNLIVGHRGSSSVQGRLTSAVFSPISLPSSLQSSFDGDTN--SVMSNFSMMDSPPQPSSQQQLP 663
                ||..|..::..|   ....:|...|..|.....|.:.  .|...:......|..|::..: 
  Rat   410 ----IVAERPGTNSTG---PGPMAPPRAPGPLSKQGSGSSQPMEVQEGYGFGTDDPYSSAEPHV- 466

  Fly   664 SAQQQSQQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQQQQQQVLHQPTSAQSMPQQLGQLVAPQG 728
            |..::|:..:                                               |::   .|
  Rat   467 SGMKRSRSGE-----------------------------------------------GEV---SG 481

  Fly   729 IVQQAGHVNLNAGPGPNISINGLGAGGPPPSFSML------EYNISRLASLTETMPDTLNDALAV 787
            ::::...|:|.     .:.:: |.:...||.|.:.      :||:..:.          ..|.|.
  Rat   482 LMRKVPRVSLE-----RLDLD-LTSDSQPPVFKVFPGSTTEDYNLIVIE----------RGAAAA 530

  Fly   788 GGGAAGPVPNVVAQVPGGSAVTGAAVVGASHAHQQQSQAVMPASAVTP----TQPITLADILSGD 848
            ..|.||.||   ...||...:.|.|:|     .:::::|.:.|....|    |:|:.:| :..| 
  Rat   531 AAGQAGTVP---PGAPGAPPLPGMAIV-----KEEETEAAIGAPPAAPEGPETKPVLMA-LTEG- 585

  Fly   849 QRALNNLQALAKLGLNNNDFCMPPATSPSLQSLNPIVGGVEDMGLNNFHAVAAPGTTSV-VTG-- 910
                                  |.|..|.|.|    ..|....||.    |.||..||. |:|  
  Rat   586 ----------------------PGAEGPRLAS----PSGSTSSGLE----VVAPEVTSAPVSGPG 620

  Fly   911 --RNKATPMQIRCKFGSL 926
              .:.||..::..|.|.|
  Rat   621 ILDDSATICRVCQKPGDL 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-P26NP_001356936.1 RING_Ubox 158..230 CDD:354325 24/74 (32%)
BBOX 321..360 CDD:237988 17/38 (45%)
BBC 369..494 CDD:128778 33/138 (24%)
NHL_brat_like 913..1186 CDD:271329 5/14 (36%)
NHL repeat 936..972 CDD:271329
NHL repeat 983..1025 CDD:271329
NHL repeat 1028..1064 CDD:271329
NHL repeat 1068..1107 CDD:271329
NHL repeat 1112..1151 CDD:271329
NHL repeat 1157..1183 CDD:271329
Trim28XP_006228170.1 zf-RING_5 66..124 CDD:291308 23/93 (25%)
BBOX 150..186 CDD:197662 13/35 (37%)
BBOX 209..247 CDD:237988 17/42 (40%)
BBC 254..380 CDD:128778 32/135 (24%)
PHD_TIF1beta 628..670 CDD:277093 3/11 (27%)
Bromodomain 697..829 CDD:295360
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.