DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AgaP_AGAP007538 and Amfr

DIOPT Version :9

Sequence 1:XP_001237062.2 Gene:AgaP_AGAP007538 / 4576491 VectorBaseID:AGAP007538 Length:703 Species:Anopheles gambiae
Sequence 2:XP_038954087.1 Gene:Amfr / 361367 RGDID:1311551 Length:643 Species:Rattus norvegicus


Alignment Length:626 Identity:271/626 - (43%)
Similarity:381/626 - (60%) Gaps:86/626 - (13%)


- Green bases have known domain annotations that are detailed below.


Mosquito    36 GAYLKDTASFMATEPFCIWTLINTAYCCLILLGKSIQKFVFGELRISEQQHMKDKFWNFIFYKFI 100
            |..::|.|.::.::...:|.|:|||.|.|:|:.|.||..|||.||:||:||:|||||||||||||
  Rat    67 GPRVRDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYKFI 131

Mosquito   101 FVFGVVNVQYLYEVILWVSWFSALGFLHLLSQLSKDRFEYLSFSPTTPGWSHFRLISLLVAILAL 165
            |:|||:|||.:.||::|..||:.|.||||:.||.||||||||||||||..||.|::|||:|:| |
  Rat   132 FIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSLLIAML-L 195

Mosquito   166 SGLMVGISIGVGVFFGGFNTFAFMAAECILLSIRTLHVLIRYGMFLHDMRQGGIANESISWDKRG 230
            |...:.:...|..:..|.:|.||||||.:|:::||.||::||.:.|.|:...|      :|:.:|
  Rat   196 SCCGLAVVCCVTGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWDLNHEG------TWEGKG 254

Mosquito   231 PVAYYIELTFEVAALMVELVHYIHMMLWSNIFLSMASLVILMQLRYLLNEIQRKIKKHRNYLWVL 295
            ...||.:...|:..|.::|:|:|||:|:.||:||||||||.||||||.:|:||:|::|:|||.|:
  Rat   255 TYVYYTDFVMELMLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVV 319

Mosquito   296 NHMEKSYPLASSDDLKQNSDNCAICWEKMETARKLPCAHLFHNSCLQSWLEQDTSCPTCRLGLSV 360
            .:||..:.:|::::|..|:|:|||||:.|:.||||||.||||||||:|||||||||||||:.|::
  Rat   320 GNMEARFAVATAEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNI 384

Mosquito   361 HQNGGPRGSPLLPDDIR---IDDQDGAVGGGGGR---TANNHFFHFNGSRYVSWLPNFSVEVTHI 419
            ......|      :|.:   :|:....|....||   ..:||||||:|||..||||:|||||.|.
  Rat   385 ADGSRAR------EDHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHT 443

Mosquito   420 NSMLRPSETLPITAAAVGNHTSQVRNMARHVQEMFPRYPLSVLIGDLQISRSIEVTIDNILEGRL 484
            .::      |.||.|:    .||:..||..:|||||:.|..:::.|||::||:|:|.|||||||:
  Rat   444 TNI------LGITQAS----NSQLNAMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILEGRI 498

Mosquito   485 QVP------------ANSPEDEDEETLGAANVASMAMSGSMDGDNGDDDDELSGELSTRSLTNSL 537
            |||            .|||.:..                      |.|.:|....:.|..:...|
  Rat   499 QVPFPVQRSDSLRPALNSPVERP----------------------GTDLEEGEASVQTERVPLDL 541

Mosquito   538 SASSLSSLSSPAGYEVERGTNIFGNYDALLRDDTVEEISSATSVPLGDRFSKSPEEREKILQRRK 602
            |.....:|...   |||            |....||:..:.     |.|||||.:||:::|.:||
  Rat   542 SPRLEETLDFS---EVE------------LEPVEVEDFEAR-----GSRFSKSADERQRMLVQRK 586

Mosquito   603 EQLLAMARRRYLEKNKSELNHQPSTSATASTSS---TVRHR 640
            :.||..||:|:|.|:..:.........:..|||   |:|.|
  Rat   587 DDLLQQARKRFLNKSSEDDGASERLLPSEGTSSDPVTLRRR 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AgaP_AGAP007538XP_001237062.2 HRD1 49..>370 CDD:227568 173/320 (54%)
TDT <99..211 CDD:296283 61/111 (55%)
zf-RING_2 315..355 CDD:290367 32/39 (82%)
CUE_AMFR 444..484 CDD:270604 21/39 (54%)
AmfrXP_038954087.1 HRD1 86..>382 CDD:227568 170/302 (56%)
RING-H2_AMFR 339..382 CDD:319369 34/42 (81%)
CUE_AMFR 458..498 CDD:270604 21/39 (54%)
G2BR 575..600 CDD:375868 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 280 1.000 Domainoid score I1667
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H888
Inparanoid 1 1.050 475 1.000 Inparanoid score I1511
OMA 1 1.010 - - QHG55068
OrthoDB 1 1.010 - - D271732at33208
OrthoFinder 1 1.000 - - FOG0006872
OrthoInspector 1 1.000 - - oto215123
Panther 1 1.100 - - LDO PTHR15067
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3836
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.080

Return to query results.
Submit another query.