DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta'COP and AT1G62020

DIOPT Version :9

Sequence 1:NP_524836.2 Gene:beta'COP / 45757 FlyBaseID:FBgn0025724 Length:914 Species:Drosophila melanogaster
Sequence 2:NP_176393.1 Gene:AT1G62020 / 842497 AraportID:AT1G62020 Length:1216 Species:Arabidopsis thaliana


Alignment Length:992 Identity:241/992 - (24%)
Similarity:420/992 - (42%) Gaps:233/992 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILT 74
            :..::|:|||.:..||..||:|.:|::|.:.:.:|....::..|:..:.|||...|...:...::
plant     4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVS 68

  Fly    75 GSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFE 139
            |.||.:|:|:||.....:.:...|.||:|.:..|...|.::::|||..|::|||:.. .|..|..
plant    69 GGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCVSVLT 132

  Fly   140 GHTHYVMQIVFNPKDNNTFASASLDRTVKVWQLGS---------------------------NFA 177
            ||.||||...|:||: :...|||||:||:||.:|:                           ...
plant   133 GHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLFGGVDAIV 196

  Fly   178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC---VQTLEGHAQNISAVCFHP 239
            .:.||||::|||...::  ...|.::||||||.||:| ..|:|.   |.||.||..|:|:|.||.
plant   197 KYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLW-RMNETKAWEVDTLRGHMNNVSSVMFHA 258

  Fly   240 ELPIVLTGSEDGTVRIWHS------GTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIK 298
            :..|:::.|||.::|:|.:      .|:|.|      .:|.|.::.....|.:|.|:|.|.|:.|
plant   259 KQDIIVSNSEDKSIRVWDATKRTGLQTFRRE------HDRFWILAVHPEMNLLAAGHDSGMIVFK 317

  Fly   299 VGREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIADGTEIKDGERLPVATKDMGACEIYPQTIAHN 363
            :.||.||.::.  |..:.:||...::.....|      .:|.:.:|:......:....|:|::::
plant   318 LERERPAFALS--GDSLFYAKDRFLRYYEYST------QRDSQVIPIRRPGTPSLNQSPRTLSYS 374

  Fly   364 PNGRFVVVCGD---GEYIIY--------TSMALRNKAFGSAQEFVWALESNEYAIRENNGTVRLF 417
            |....|::|.|   |.|.:|        .|..:::...|:....|: :..|.:|:.|.:.:..|.
plant   375 PTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF-IARNRFAVLEKSTSQVLV 438

  Fly   418 RNFKE---RKSFTPEYGAESIYGGYYFGVKTSSGLAFYDWETLQLVRRIEVQPKNVFWNESGSLV 479
            :|.|.   :||..|              :.|.:                      :|:..:|:|:
plant   439 KNLKNEVVKKSPLP--------------IPTDA----------------------IFYAGTGNLL 467

  Fly   480 CLATD-------DSYFVLGVDTAQVANAVETKEGLEDDGVESAFNVL----GEVSEC-------V 526
            |.:.|       ....|||.........|.....:|...:.|...::    ..|.:|       |
plant   468 CRSEDKVVIFDLQQRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRV 532

  Fly   527 KTGLWVGD-CFIYTNSVNRINYYV-GGEIVTVSHLDRTMYLLGYVPK--DNRIYLGDKE------ 581
            |:|.|..: .|||| ::|.|.|.: .|:    |.:.||:.:..|:.|  .|.|:..|::      
plant   533 KSGAWDDNGVFIYT-TLNHIKYCLPNGD----SGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAI 592

  Fly   582 -LNVISFCLQLSVLEYQTAVMRRDFERADVVLPTIPKEH---RTRVAHFLEKQGFKSQALQVSTD 642
             :|...:..:||:|.          :|.|.|:..|....   :..:| :|:::||...||....|
plant   593 TINATEYIFKLSLLR----------KRYDHVMSMIKNSQLCGQAMIA-YLQQKGFPEVALHFVED 646

  Fly   643 ADHKFDLALQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTA 707
            ...:|:|||:.|::.:|:..|.:......|.:|...|..:.|..:|:...|:..:...|..|...
plant   647 ERIRFNLALESGNISVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLI 711

  Fly   708 SGD----AQLLEVVGAAGSAQGH-HNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQ 767
            :|:    ::|:::.....:..|. ||..:|     .||:..::||.....||.|...|..:    
plant   712 TGNLDKLSKLMKIAEVKNNVMGQFHNALYL-----GDVKERVKILENAGHLPLAYITASVH---- 767

  Fly   768 MSRIVELWREKLGKVNEKAGQSLADPAQYTNLFPGLGDALRVEQHLQEERARKAPARLAANLPLN 832
                      .|..:.|:....|.|..      |.|.:.             |.|:.|....|:.
plant   768 ----------GLNDIAERLATELGDNV------PSLPEG-------------KTPSLLMPPTPIM 803

  Fly   833 -SERHPLQE---------LFAAEQGAAGQHLEEKVKPAYVPAQAVVSSSQVAEPTSAADDDDDLD 887
             ....||..         |.:|::|  |...||.|:                     .|..::||
plant   804 CGGDWPLLRVMKGIFEGGLESADRG--GTVDEEDVE---------------------GDWGEELD 845

  Fly   888 LEIDGITLDDNIDTTDV 904
            :.:||:   :|.|..|:
plant   846 INVDGM---ENRDIEDI 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta'COPNP_524836.2 WD40 8..378 CDD:225201 122/406 (30%)
WD40 8..297 CDD:238121 104/322 (32%)
WD40 repeat 20..55 CDD:293791 9/34 (26%)
WD40 repeat 61..97 CDD:293791 9/35 (26%)
WD40 repeat 102..139 CDD:293791 12/36 (33%)
WD40 repeat 146..182 CDD:293791 14/62 (23%)
WD40 repeat 188..226 CDD:293791 16/40 (40%)
Coatomer_WDAD 321..765 CDD:281977 102/494 (21%)
AT1G62020NP_176393.1 WD40 9..317 CDD:238121 104/318 (33%)
WD40 repeat 15..49 CDD:293791 9/33 (27%)
WD40 repeat 55..91 CDD:293791 9/35 (26%)
WD40 repeat 96..132 CDD:293791 12/36 (33%)
WD40 repeat 139..201 CDD:293791 14/62 (23%)
WD40 repeat 207..245 CDD:293791 16/40 (40%)
WD40 repeat 251..288 CDD:293791 11/36 (31%)
Coatomer_WDAD 337..769 CDD:367786 102/509 (20%)
COPI_C 816..1210 CDD:369149 15/70 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D139008at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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