DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta'COP and copa-1

DIOPT Version :9

Sequence 1:NP_524836.2 Gene:beta'COP / 45757 FlyBaseID:FBgn0025724 Length:914 Species:Drosophila melanogaster
Sequence 2:NP_491069.1 Gene:copa-1 / 171860 WormBaseID:WBGene00022119 Length:1232 Species:Caenorhabditis elegans


Alignment Length:1026 Identity:263/1026 - (25%)
Similarity:437/1026 - (42%) Gaps:239/1026 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILT 74
            :..|:|.|||.:..||..||:|.:|::|.:.:.:|....:::.|:..|.|||...|...:...::
 Worm     6 KFESKSARVKGISFHPTRPWVLTSLHSGVIQLWDYRMCVLLEKFDEHDGPVRGICFHHDQPIFVS 70

  Fly    75 GSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFE 139
            |.||.:|:|:||.....:.:...|.||:|....|...|.::::|||..:::|||:...:. .:..
 Worm    71 GGDDYKIKVWNYKQKRCIFTLLGHLDYIRTTFFHHKYPWIISASDDQTVRIWNWQSRNSI-AILT 134

  Fly   140 GHTHYVMQIVFNPKDNNTFASASLDRTVKVWQL------------------GSNFANF------- 179
            ||.||||...|:|.: :..||||||:||:||.:                  |...|..       
 Worm   135 GHNHYVMCAQFHPTE-DLVASASLDQTVRVWDISGLRKKQMPGGGAPSRPTGGQQAELFGQPDAV 198

  Fly   180 ---TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE---GHAQNISAVCFH 238
               .||||::|||.|.::|  ..|.|:||:|||.||||.| |:|....|:   ||..|:|:|.||
 Worm   199 VKHVLEGHDRGVNWVAFHH--TNPILVSGSDDRQVKIWRY-NETKAWELDSCRGHYNNVSSVIFH 260

  Fly   239 PELPIVLTGSEDGTVRIW--------HSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSI 295
            |...::|:.|||.::|:|        |  .:|.|.      ||.|.:::....|..|.|:|.|.:
 Worm   261 PNADLILSNSEDKSIRVWDMQKRTSLH--VFRHEN------ERFWVLAAHPSLNMFAAGHDNGMV 317

  Fly   296 IIKVGREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIADGTEIKDGERLPVATKDMGACEI-YPQ- 358
            :.|:.||.||..  |..:.:.:.|..::::::|.|                .||:..|:: ||| 
 Worm   318 VFKIQRERPAYC--VSDNLVFYVKGQQIRKLDLTT----------------NKDVALCKLRYPQP 364

  Fly   359 ------TIAHNP-NGRFVV--------VC----------GDGEYIIYTSMALRNKAFGSAQEFVW 398
                  :::.|| .|.|::        :|          .||     |:.|...|:.|.  ..:|
 Worm   365 FMQPYYSLSFNPAEGTFLLTSRTHNKDLCAFELYKVASNSDG-----TTEAACVKSTGI--NALW 422

  Fly   399 ALESNEYAI--RENNGTVRLFRNFKERKSFTPEYGAESIYGGYYFG-----VKTSSGLAFYDWET 456
             :..|.:|:  :..|.::|...|.:.||........:.|   :|.|     ::...||..:|.:.
 Worm   423 -VARNRFAVLDKAQNVSLRDLTNKELRKLENINTAVDDI---FYAGTGMLLLRNDDGLQLFDVQQ 483

  Fly   457 LQLVRRIEV-QPKNVFWNESGSLVCLATDDSYFVLGVDTAQVANAVETKEGLEDDGVESAFNVL- 519
            ..:...::| :.:.|.|::|.....|        |...|..:.|              ....:| 
 Worm   484 KIVTASVKVSKVRYVIWSKSMEFAAL--------LSKHTLTLVN--------------RKLEILC 526

  Fly   520 -GEVSECVKTGLWVGD-CFIYTNSVNRINYYV-GGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKE 581
             .:.|..||:|.|..| .|:||.| |.|.|.: .|:...|..||..:|:|..  :.|.:|..:::
 Worm   527 TQQESTRVKSGAWDDDSVFLYTTS-NHIKYAINSGDCGIVRTLDLPLYILAI--RGNVLYCLNRD 588

  Fly   582 LNVISFCLQLSVLEYQTAVMRRDFERADVVLPTIPKEHRT--RVAHFLEKQGFKSQALQVSTDAD 644
            ...:...:..|..:::.|::.:   |.|.|:..:...:..  .:..:|||:|:...||....|..
 Worm   589 ATPVEVPIDNSDYKFKLALINK---RIDEVVNMVRSANLVGQSIIGYLEKKGYPEIALHFVKDEK 650

  Fly   645 HKFDLALQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTASG 709
            .:|.||::.|:|||||:.|::.:....|..|.:.|..:.|..:|:...|:..:...|..|...:|
 Worm   651 TRFGLAIECGNLEIALEAAKKLDEPAVWEALGETALLQGNHQIVEMSYQRTKNFEKLSFLYFVTG 715

  Fly   710 D----AQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSR 770
            :    .:::::..|...|.||    |.:|....|||..:::|                       
 Worm   716 NTDKLVKMMKIAQARNDAHGH----FQTALYTGDVEERVKVL----------------------- 753

  Fly   771 IVELWREKLGKVNEKAGQ-SLADPAQYTNLFPGLGDALRVEQHLQEERARKAP------------ 822
                         ...|| |||..|..|:.:....:.|:.|   .|.|.:..|            
 Worm   754 -------------RNCGQTSLAYLAAATHGYSAEAEELKAE---LESRQQPIPPVDPNARLLVPP 802

  Fly   823 ---ARLAANLPLNSERHPLQELFAAE-QGAAGQHLEEK---VKPAYVPAQAVVSSSQVAEPTSAA 880
               |||..|.||.:.   .:..|.|: .|..||.....   |||| ..|.||:..........|.
 Worm   803 PPVARLEENWPLLAS---ARGTFDAQLLGLGGQSAPTNVGGVKPA-AAAFAVMDDDDGDVGNEAW 863

  Fly   881 DDD-----DDLDLEID------------GITLDDNIDTTDVNLDDDFLSDD 914
            .||     :|.:|::|            |..:||::...||. ||....||
 Worm   864 GDDEYLVGEDGELDVDEGEGPVDGDEEGGWDVDDDLALPDVT-DDQGGDDD 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta'COPNP_524836.2 WD40 8..378 CDD:225201 129/433 (30%)
WD40 8..297 CDD:238121 107/325 (33%)
WD40 repeat 20..55 CDD:293791 9/34 (26%)
WD40 repeat 61..97 CDD:293791 9/35 (26%)
WD40 repeat 102..139 CDD:293791 9/36 (25%)
WD40 repeat 146..182 CDD:293791 15/63 (24%)
WD40 repeat 188..226 CDD:293791 18/37 (49%)
Coatomer_WDAD 321..765 CDD:281977 104/488 (21%)
copa-1NP_491069.1 WD40 7..317 CDD:238121 107/322 (33%)
WD40 14..503 CDD:225201 147/530 (28%)
WD40 repeat 17..51 CDD:293791 9/33 (27%)
WD40 repeat 57..93 CDD:293791 9/35 (26%)
WD40 repeat 98..134 CDD:293791 9/36 (25%)
WD40 repeat 141..204 CDD:293791 15/63 (24%)
WD40 repeat 210..243 CDD:293791 18/35 (51%)
WD40 repeat 254..288 CDD:293791 12/35 (34%)
Coatomer_WDAD 341..770 CDD:281977 111/523 (21%)
COPI_C 820..1227 CDD:284395 27/96 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122926at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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