Sequence 1: | NP_524836.2 | Gene: | beta'COP / 45757 | FlyBaseID: | FBgn0025724 | Length: | 914 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_491069.1 | Gene: | copa-1 / 171860 | WormBaseID: | WBGene00022119 | Length: | 1232 | Species: | Caenorhabditis elegans |
Alignment Length: | 1026 | Identity: | 263/1026 - (25%) |
---|---|---|---|
Similarity: | 437/1026 - (42%) | Gaps: | 239/1026 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 RLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILT 74
Fly 75 GSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFE 139
Fly 140 GHTHYVMQIVFNPKDNNTFASASLDRTVKVWQL------------------GSNFANF------- 179
Fly 180 ---TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE---GHAQNISAVCFH 238
Fly 239 PELPIVLTGSEDGTVRIW--------HSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSI 295
Fly 296 IIKVGREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIADGTEIKDGERLPVATKDMGACEI-YPQ- 358
Fly 359 ------TIAHNP-NGRFVV--------VC----------GDGEYIIYTSMALRNKAFGSAQEFVW 398
Fly 399 ALESNEYAI--RENNGTVRLFRNFKERKSFTPEYGAESIYGGYYFG-----VKTSSGLAFYDWET 456
Fly 457 LQLVRRIEV-QPKNVFWNESGSLVCLATDDSYFVLGVDTAQVANAVETKEGLEDDGVESAFNVL- 519
Fly 520 -GEVSECVKTGLWVGD-CFIYTNSVNRINYYV-GGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKE 581
Fly 582 LNVISFCLQLSVLEYQTAVMRRDFERADVVLPTIPKEHRT--RVAHFLEKQGFKSQALQVSTDAD 644
Fly 645 HKFDLALQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTASG 709
Fly 710 D----AQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSR 770
Fly 771 IVELWREKLGKVNEKAGQ-SLADPAQYTNLFPGLGDALRVEQHLQEERARKAP------------ 822
Fly 823 ---ARLAANLPLNSERHPLQELFAAE-QGAAGQHLEEK---VKPAYVPAQAVVSSSQVAEPTSAA 880
Fly 881 DDD-----DDLDLEID------------GITLDDNIDTTDVNLDDDFLSDD 914 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
beta'COP | NP_524836.2 | WD40 | 8..378 | CDD:225201 | 129/433 (30%) |
WD40 | 8..297 | CDD:238121 | 107/325 (33%) | ||
WD40 repeat | 20..55 | CDD:293791 | 9/34 (26%) | ||
WD40 repeat | 61..97 | CDD:293791 | 9/35 (26%) | ||
WD40 repeat | 102..139 | CDD:293791 | 9/36 (25%) | ||
WD40 repeat | 146..182 | CDD:293791 | 15/63 (24%) | ||
WD40 repeat | 188..226 | CDD:293791 | 18/37 (49%) | ||
Coatomer_WDAD | 321..765 | CDD:281977 | 104/488 (21%) | ||
copa-1 | NP_491069.1 | WD40 | 7..317 | CDD:238121 | 107/322 (33%) |
WD40 | 14..503 | CDD:225201 | 147/530 (28%) | ||
WD40 repeat | 17..51 | CDD:293791 | 9/33 (27%) | ||
WD40 repeat | 57..93 | CDD:293791 | 9/35 (26%) | ||
WD40 repeat | 98..134 | CDD:293791 | 9/36 (25%) | ||
WD40 repeat | 141..204 | CDD:293791 | 15/63 (24%) | ||
WD40 repeat | 210..243 | CDD:293791 | 18/35 (51%) | ||
WD40 repeat | 254..288 | CDD:293791 | 12/35 (34%) | ||
Coatomer_WDAD | 341..770 | CDD:281977 | 111/523 (21%) | ||
COPI_C | 820..1227 | CDD:284395 | 27/96 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D122926at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |