| Sequence 1: | NP_524836.2 | Gene: | beta'COP / 45757 | FlyBaseID: | FBgn0025724 | Length: | 914 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001121466.1 | Gene: | copa / 100158562 | XenbaseID: | XB-GENE-989762 | Length: | 1224 | Species: | Xenopus tropicalis |
| Alignment Length: | 919 | Identity: | 235/919 - (25%) |
|---|---|---|---|
| Similarity: | 389/919 - (42%) | Gaps: | 222/919 - (24%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 10 RLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILT 74
Fly 75 GSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFE 139
Fly 140 GHTHYVMQIVFNPKDNNTFASASLDRTVKVWQL--------------------------GSNFA- 177
Fly 178 -NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--VQTLEGHAQNISAVCFHP 239
Fly 240 ELPIVLTGSEDGTVRIWHSG------TYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIK 298
Fly 299 VGREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIADGT--EIKDGERLPVATKDMGACEIYPQTIA 361
Fly 362 HNPNGRFVVVC------GDGEYIIYTSMALRNKAFGSAQE--------FVWALESNEYAIRENNG 412
Fly 413 TVRLFRNFKE---RKSFTPEYGAESIYGGYYFG-----VKTSSGLAFYDWETLQLVRRIEV-QPK 468
Fly 469 NVFWNESGSLVCLATDDSYFVLGVDTAQVANAVETKEGLEDDGVESAFNVLGEVSECVKTGLW-V 532
Fly 533 GDCFIYTNSVNRINYYVGGEIVTVSH-LDRTMYLLGYVP--KDNRIYLGDKELNVISFCLQLSVL 594
Fly 595 EYQTAVMRRDFERADVVLPTIPKEHRTR--------VAHFLEKQGFKSQALQVSTDADHKFDLAL 651
Fly 652 QIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTASGDAQLLEV 716
Fly 717 VGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSRIVELWREKLGK 781
Fly 782 VNEKAGQSLADPAQYTN-LFPGLGDALRVEQHLQEERAR-------KAPARL-AANLPLNSERHP 837
Fly 838 LQELFAAEQ 846 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| beta'COP | NP_524836.2 | WD40 | 8..378 | CDD:225201 | 121/411 (29%) |
| WD40 | 8..297 | CDD:238121 | 104/322 (32%) | ||
| WD40 repeat | 20..55 | CDD:293791 | 10/34 (29%) | ||
| WD40 repeat | 61..97 | CDD:293791 | 9/35 (26%) | ||
| WD40 repeat | 102..139 | CDD:293791 | 13/36 (36%) | ||
| WD40 repeat | 146..182 | CDD:293791 | 14/63 (22%) | ||
| WD40 repeat | 188..226 | CDD:293791 | 15/39 (38%) | ||
| Coatomer_WDAD | 321..765 | CDD:281977 | 97/480 (20%) | ||
| copa | NP_001121466.1 | WD40 | 9..318 | CDD:238121 | 104/318 (33%) |
| WD40 repeat | 15..49 | CDD:293791 | 10/33 (30%) | ||
| WD40 repeat | 55..91 | CDD:293791 | 9/35 (26%) | ||
| WD40 repeat | 96..132 | CDD:293791 | 13/36 (36%) | ||
| WD40 repeat | 139..202 | CDD:293791 | 14/63 (22%) | ||
| WD40 repeat | 208..241 | CDD:293791 | 13/34 (38%) | ||
| WD40 repeat | 249..278 | CDD:293791 | 11/28 (39%) | ||
| WD40 repeat | 327..358 | CDD:293791 | 5/32 (16%) | ||
| Coatomer_WDAD | 338..767 | CDD:367786 | 117/556 (21%) | ||
| COPI_C | 816..1218 | CDD:369149 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D122926at33208 | |
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.920 | |||||