DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FarO and FAR5

DIOPT Version :9

Sequence 1:NP_652021.1 Gene:FarO / 45707 FlyBaseID:FBgn0023550 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_190041.2 Gene:FAR5 / 823580 AraportID:AT3G44550 Length:496 Species:Arabidopsis thaliana


Alignment Length:520 Identity:127/520 - (24%)
Similarity:219/520 - (42%) Gaps:99/520 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EFFEDSEIFVTGGSGVVGKALVEKLLR-SCNVRRIYVLLRPRKQLTAEQRL-VRLRQATVFHVLA 73
            :|..:..|.|||.:|.:.|..|||:|| ..||:::|:|:|......|.:|| ..:.:..:|.||.
plant     7 QFLRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRLRTEVFEKELFKVLR 71

  Fly    74 VQKPEE------LDKIVAVPGDVSLPGLGI-DPSMMQRM-KGVSLVYHCAATVRFDEPLREAVRL 130
            ....:|      .:|:|:||||::...||| |..:.:|| |.:.:|.:.|||..|||.....:.:
plant    72 QNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAATTNFDERYDVGLGI 136

  Fly   131 NVGGTLEALKFAETLPQLRAFIHVSTFY----------SNPYLTRVEPKYYSSPMDWRLCLRMI- 184
            |..|.|..|.||:...:::..:||||.|          ..|::...........:|..|...:: 
plant   137 NTFGALNVLNFAKKCVKVQLLLHVSTAYVCGEKPGLIPEKPFIMEEIRNENGLQLDINLERELMK 201

  Fly   185 ---------DDVADDGMLN----ALTRKLIMGFPNTYTFTKNLAESLVNDYRHRLPVIVYRPSIV 236
                     |...:|..|:    .:.|..:.|:||||.|||::.|.|:..::..||:::.||:::
plant   202 QRLKELNEQDCSEEDITLSMKELGMERAKLHGWPNTYVFTKSMGEMLLGKHKENLPLVIIRPTMI 266

  Fly   237 LFAVEDPSPGFSPSLMGAMGLFALVGAGILKTVYLGKDIRLDITPQDIGIKSMLCYTKMGYDIYR 301
            ...:.:|.||:...|.....:....|.|:||...:..:...|:.|.|:...:|:.....    :.
plant   267 TSTLSEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPVDMVANAMITAAAK----HA 327

  Fly   302 QGPPADLPVFLSSSCTHVPHTFTQIAEQMDTLDLWRDVA---FEKN---------LMIPGCHYTD 354
            .|....:...:.||..: |.||.:|.|          :|   |.||         :.:....:..
plant   328 GGSGVHMVYHVGSSHQN-PVTFGEIHE----------IAVRYFTKNPLRSRNGSLITVSKVRFIP 381

  Fly   355 KRWAYQFLVFTKQILPALILDLLLRI--------FGQKPVLMSAVRKAYQTLEVMQPFMF----- 406
            ....:...:..:..||..:|.|:..|        :|.|...:..|.:   .:|:.:|::.     
plant   382 TMALFSLYMTLRYKLPLQLLKLVDIIYPWRNGDKYGDKNRKIELVMR---LVELYEPYVLFKGIF 443

  Fly   407 --NNWDSPGVSDMETLSKHGEGSAFNFD--AFNHPD------IHGLVIQSCSNMLHSIRTHLLRE 461
              .|..|...:..|...|:.|...|:||  ..|..|      |.|||            ||:|::
plant   444 DDRNTKSLCANQKEEEIKNTEKLMFDFDPKGINWGDYLTNIHISGLV------------THVLKK 496

  Fly   462  461
            plant   497  496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FarONP_652021.1 FAR-N_SDR_e 18..328 CDD:187547 94/343 (27%)
FAR_C 379..>410 CDD:296071 7/45 (16%)
FAR5NP_190041.2 PLN02996 1..495 CDD:215538 126/517 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 1 0.900 - - OOG6_100550
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.780

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