DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FarO and Far1

DIOPT Version :9

Sequence 1:NP_652021.1 Gene:FarO / 45707 FlyBaseID:FBgn0023550 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001272760.1 Gene:Far1 / 67420 MGIID:1914670 Length:515 Species:Mus musculus


Alignment Length:520 Identity:154/520 - (29%)
Similarity:267/520 - (51%) Gaps:70/520 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EFFEDSEIFVTGGSGVVGKALVEKLLRSC-NVRRIYVLLRPRKQLTAEQRLVRLRQATVFHVLAV 74
            |::|...|.:||.:|.:||.|:||||||| .|..:|||:|.:...|.::|:..:..:.:|..|..
Mouse     6 EYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSKLFDRLRD 70

  Fly    75 QKPEELDKIVAVPGDVSLPGLGI---DPSMMQRMKGVSLVYHCAATVRFDEPLREAVRLNVGGTL 136
            :.|:..:||:|:..:::.|.|.:   |..::  :...::::||||||||:|.||:||:|||..|.
Mouse    71 ENPDFREKIIAINSELTQPKLALSEEDKEII--IDSTNVIFHCAATVRFNENLRDAVQLNVIATR 133

  Fly   137 EALKFAETLPQLRAFIHVSTFYSNPYLTRVEPKYYSSPMDWRLCLRMIDDV--ADDGMLNALTRK 199
            :.:..|:.:..|..|:||||.|:......::...|..|:|.:   ::||.:  .|||::|.:|.|
Mouse   134 QLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPK---KLIDSLEWMDDGLVNDITPK 195

  Fly   200 LIMGFPNTYTFTKNLAESLVNDYRHRLPVIVYRPSIVLFAVEDPSPGFSPSLMGAMGLFALVGAG 264
            ||...||||.:||.|||.:|.....:|.|.:.|||||..:.::|.||:..:..|..|||...|.|
Mouse   196 LIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKG 260

  Fly   265 ILKTVYLGKDIRLDITPQDIGIKSMLC---YTKMGYDIYRQGPPADLPVFLSSSCT--------- 317
            ||:|:....:...|:.|.|:.:.:.|.   |:.:       ..|.::.|:   :||         
Mouse   261 ILRTMRASNNALADLVPVDVVVNTSLAAAWYSGV-------NRPRNIMVY---NCTTGSTNPFHW 315

  Fly   318 -----HVPHTFTQIAEQMDTLD-LWRD--VAF-EKNLMIPGCHYTDKRWAYQFLVFTKQILPALI 373
                 ::.|:|     :|:.|: ::|.  |.| ..|||:   ||    |.     ..|..:|||:
Mouse   316 GEVGDYLNHSF-----KMNPLNQVFRHPYVKFCSNNLML---HY----WK-----GVKHTVPALL 363

  Fly   374 LDLLLRIFGQKPVLMSAVRKAYQTLEVMQPFMFNN--WDSPGVSDMETLSKHGEGSAFNFDAFNH 436
            |||.||:.||||.:|..:.:.::.:..::.|..|:  |::..|:.:.......:...||.|.   
Mouse   364 LDLALRLTGQKPWMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDV--- 425

  Fly   437 PDIHGLVIQSCSNMLHSIRTHLLREDPKTLERSKRILRIKVFLYRLLRLFLLYKLILWLWRSYLA 501
            ..:|.  .:...|.....:.::|.|:...|..:::.|.    ..|.:|......|::.:||.::|
Mouse   426 RQLHW--AEYIENYCMGTKKYVLNEEMSGLPAARKHLN----KLRNIRYGFNTILVILIWRIFIA 484

  Fly   502  501
            Mouse   485  484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FarONP_652021.1 FAR-N_SDR_e 18..328 CDD:187547 108/332 (33%)
FAR_C 379..>410 CDD:296071 8/32 (25%)
Far1NP_001272760.1 FAR-N_SDR_e 11..330 CDD:187547 109/338 (32%)
Sterile 371..447 CDD:376978 14/80 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847907
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100550
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.750

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