DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FarO and CG14893

DIOPT Version :9

Sequence 1:NP_652021.1 Gene:FarO / 45707 FlyBaseID:FBgn0023550 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_650568.2 Gene:CG14893 / 42023 FlyBaseID:FBgn0038451 Length:510 Species:Drosophila melanogaster


Alignment Length:526 Identity:147/526 - (27%)
Similarity:246/526 - (46%) Gaps:77/526 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 MEEFFEDSEIFVTGGSGVVGKALVEKLLRSCNVRRIYVLLRPRKQLTAEQRLVRLRQATVFHVLA 73
            ::.|::|..:|:||.:|.:||.::|||||:..|:|||.::||::....::||...::..:|.||.
  Fly    16 IQGFYKDKVVFLTGATGFLGKVIIEKLLRTTEVKRIYAMMRPKRGKDIQERLAIWQKDPLFEVLL 80

  Fly    74 VQKPEELDKIVAVPGDVSLPGLGIDPSMMQRM-KGVSLVYHCAATVRFDEPLREAVRLNVGGTLE 137
            ..||:.|.:|..:.||...|.|||:.|..:.: ..|.:|.|.||||||:|||..|:.:|..||..
  Fly    81 KAKPDALKRIFVIAGDCLDPDLGINRSDRKLLVSEVHIVIHGAATVRFNEPLHVALAINTRGTRL 145

  Fly   138 ALKFAETLPQLRAFIHVSTFYSNPYLTRVEPKYYSSPM--DWRLCLRMIDDVADDGMLNALTRKL 200
            .|:.|:.:.||.|::|:||.:||..:.|:|.|:|...:  |....|.| .::..:.|::.|...|
  Fly   146 MLQLAKEMLQLEAYLHISTAFSNCVIFRIEEKFYPEHLTCDANSVLAM-SELLSEQMMDKLAPTL 209

  Fly   201 IMGFPNTYTFTKNLAESLVNDYRHRLPVIVYRPSIVLFAVEDPSPGFSPSLMGAMGLFALVGAGI 265
            :..||||||:||.|||.:|......||:.::|||:::...|:|..|:..:|.|.:.....|..|:
  Fly   210 VGNFPNTYTYTKALAEDVVLREFGDLPLSIFRPSVIIATHEEPVSGWIDNLYGPIAHIYGVSHGV 274

  Fly   266 LKTVYLGKDIRLDITPQDI--------------------GIKSMLCYTKMGYDIYRQGPPADLPV 310
            |:.....||....:.|.|.                    .|.....||.         .|::..:
  Fly   275 LRLTTYDKDGYASLVPVDYCANAALASIWQTSKDKSQRNAISQPAIYTL---------APSEKNL 330

  Fly   311 FLSSSCTHVPHTFTQIAEQMDTLDLWRDVAFEKNLMIPGCHYTDKRWAYQFLVFTKQILPALILD 375
            .|::.  .:.|:...          ..|....|.:..|..|.......:....|....||....|
  Fly   331 LLNTD--FIKHSLIH----------RNDFPLTKMIWYPFVHNISNPRIFPLAAFFYHTLPGYFYD 383

  Fly   376 LLLRIFGQKPVLMSAVRKAYQTLEVMQPFMFNNW--DSPGVSDMETLSKHGEGSAFNFDA----- 433
            |.||:.|:||.|:...|..:..:.|::.||.|:|  ::.....:..:....:...:|||.     
  Fly   384 LALRLSGRKPRLVKLYRSIHANIAVLEHFMNNSWHFETKSTDRLRVMMSPEDRRLYNFDMETLDW 448

  Fly   434 ---FNHPDIHGLVIQSCSNMLHSIRTHLLREDP--KTLERSKRIL-RIKVFLYRLLRL------F 486
               |.             ..|..:|.:|.:|.|  ::||:.:|:. |:|:..|..:.|      |
  Fly   449 KEYFR-------------KALFGMRLYLTKEPPTQESLEQGRRLFYRLKILHYSFVTLLCVIAGF 500

  Fly   487 LLYKLI 492
            ||:.|:
  Fly   501 LLWTLV 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FarONP_652021.1 FAR-N_SDR_e 18..328 CDD:187547 104/332 (31%)
FAR_C 379..>410 CDD:296071 11/32 (34%)
CG14893NP_650568.2 PLN02996 19..452 CDD:215538 130/454 (29%)
FAR-N_SDR_e 23..339 CDD:187547 103/327 (31%)
Sterile 375..465 CDD:281068 23/102 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466750
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG26995
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
109.860

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