DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FarO and CG8306

DIOPT Version :9

Sequence 1:NP_652021.1 Gene:FarO / 45707 FlyBaseID:FBgn0023550 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_611140.3 Gene:CG8306 / 36857 FlyBaseID:FBgn0034142 Length:516 Species:Drosophila melanogaster


Alignment Length:511 Identity:158/511 - (30%)
Similarity:261/511 - (51%) Gaps:40/511 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SGEMEEFFEDSEIFVTGGSGVVGKALVEKLLRSC-NVRRIYVLLRPRKQLTAEQRLVRLRQATVF 69
            |..:.:|:....:|:||.:|.||..:||||||.. ||..:|:|:|.:|..:.::||..|::.:||
  Fly     3 SSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNSVF 67

  Fly    70 HVL-AVQKPEELDKIVAVPGDVSLPGLGIDPSMMQRM-KGVSLVYHCAATVRFDEPLREAVRLNV 132
            ... .:|....|.|||.:.|||.|..|||.|...|.: ..|::|:|.|||:.|.:.|:|...:|:
  Fly    68 DKFKELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLKETTNINL 132

  Fly   133 GGTLEALKFAETLPQLRAFIHVSTFYSNPYLTRVEPKYYSSPMDWRLCLRMIDDVADDGMLNALT 197
            .||...::..:.:..|.|.:|||:.|.|.|||:||.|.|.:|.|....:::.:.:.||. |..|.
  Fly   133 RGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDA-LKELE 196

  Fly   198 RKLIMGFPNTYTFTKNLAESLVNDYRHRLPVIVYRPSIVLFAVEDPSPGFSPSLMGAMGLFALVG 262
            .||:...||||||||:|||..|.:...:.|..:.|||::..|.::|.||::.|..|..|.|....
  Fly   197 PKLLKDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGAS 261

  Fly   263 AGILKTVYLGKDIRLDITPQDIGIKSMLCYTKMGYDI-----YRQGPPADLPVFLSSSCTHVPHT 322
            .|:|:.:.|...|.:|..|.|:.:..::   ..||.:     ...|.||||.:|..:|.|:.|..
  Fly   262 KGVLRRLPLDPSIIMDYIPIDVVVNGII---TTGYYVNSLQAKNGGRPADLQIFHLTSSTYKPFR 323

  Fly   323 FTQIAEQMDTLDLWRDVAFEKNLMIPGCHYTDKRWAYQFLVFTKQILPALILDLLLRIFGQKPVL 387
            |..:.:::::  ...|......:..|........|.::........:||:||||:.:|.|.:|:|
  Fly   324 FELMTDKINS--YLHDYPLNSAVWYPNLRLVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRPIL 386

  Fly   388 MSAVRKAYQTLEVMQPFMFNNW--DSPGVSDMETLSKHGEGSAFNFDAFNHPDIHGLVI------ 444
            :...:..:.:|..::.|:|..|  ||   ..:..|||          ..|..|.....|      
  Fly   387 VRLHKNVWNSLNTLEKFIFTEWHFDS---KRLLALSK----------TLNIVDKKKFFIDIGELA 438

  Fly   445 --QSCSNMLHSIRTHLLREDPKTLERSKRILRIKVFLYRLLRL---FLLYKLILWL 495
              :..||.:..:|.:|.:|..|.||:::|..:|.:.|:..|:|   :.::|||:.|
  Fly   439 WDEYFSNTILGVRQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCL 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FarONP_652021.1 FAR-N_SDR_e 18..328 CDD:187547 114/317 (36%)
FAR_C 379..>410 CDD:296071 8/32 (25%)
CG8306NP_611140.3 PLN02996 6..456 CDD:215538 144/468 (31%)
FAR-N_SDR_e 13..339 CDD:187547 115/331 (35%)
FAR_C 364..454 CDD:176924 25/102 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466803
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
98.850

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