DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FarO and far1

DIOPT Version :9

Sequence 1:NP_652021.1 Gene:FarO / 45707 FlyBaseID:FBgn0023550 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_017948360.1 Gene:far1 / 100038270 XenbaseID:XB-GENE-973776 Length:518 Species:Xenopus tropicalis


Alignment Length:515 Identity:152/515 - (29%)
Similarity:262/515 - (50%) Gaps:57/515 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EFFEDSEIFVTGGSGVVGKALVEKLLRSC-NVRRIYVLLRPRKQLTAEQRLVRLRQATVFHVLAV 74
            ||:....:.:||.:|.:||.|:||||||| ||:.:|||:||:......:|:..:....:|..|..
 Frog     6 EFYRGKNVLITGATGFMGKVLLEKLLRSCPNVKAVYVLVRPKASQKPRERVAEMMSCKLFDRLRD 70

  Fly    75 QKPEELDKIVAVPGDVSLPGLGI---DPSMMQRMKGVSLVYHCAATVRFDEPLREAVRLNVGGTL 136
            ::||...|::|:..:::.|.|.:   |..|:  :..:.:|:||||||||:|.||:|::|||..|.
 Frog    71 EQPECAQKVIAISSELTQPELDLSKEDQDML--IDCIDIVFHCAATVRFNESLRDAMQLNVIATR 133

  Fly   137 EALKFAETLPQLRAFIHVSTFYSNPYLTRVEPKYYSSPMDWRLCLRMIDDVADDGMLNALTRKLI 201
            :.|..|:.:.:|..||||||.|:|....::|...|..|:|.:..:..::.: |||::|.:|.|||
 Frog   134 QLLYLAQKIKKLEVFIHVSTAYANCNRKQIEEMVYPPPVDPKKLIESLEWM-DDGLVNDITPKLI 197

  Fly   202 MGFPNTYTFTKNLAESLVNDYRHRLPVIVYRPSIVLFAVEDPSPGFSPSLMGAMGLFALVGAGIL 266
            ...|||||:||.|||.:|.....:|.:.:.|||||..:.::|.||:..:..|..|||...|.|||
 Frog   198 GDRPNTYTYTKALAEYVVQQEGSKLNIAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGIL 262

  Fly   267 KTVYLGKDIRLDITPQDIGIKSMLC---YTKMGYDIYRQGPPADLPVFLSSSCT----------- 317
            :|:....:...|:.|.|:.:.:.|.   |:    .:.|...|.::.|:   :||           
 Frog   263 RTMRASNNAVADLIPVDVVVNTTLAAAWYS----GVNRYSRPRNILVY---NCTTGGTNPFHWGE 320

  Fly   318 ---HVPHTFTQ-IAEQMDTLDLWRDVAFEKNLMIPGCHYTDKRWAYQFLVFTKQILPALILDLLL 378
               ||..||.: ..||          ||.:    |..:.|.....|.:.:......||.:.|:.|
 Frog   321 VEYHVISTFKRNPLEQ----------AFRR----PNVNLTSNHLLYHYWIAVSHKAPAFLYDVYL 371

  Fly   379 RIFGQKPVLMSAVRKAYQTLEVMQPFMFNN--WDSPGVSDMETLSKHGEGSAFNFDAFNHPDIHG 441
            ||.|:.|.:|..:.:.::.:.:::.|..|:  |::...:.:.:.....:..|||||.   ..:|.
 Frog   372 RITGRSPRMMKTITRLHKAMMLLEYFTSNSWVWNNENTNMLMSQLSPDDKKAFNFDV---RQLHW 433

  Fly   442 LVIQSCSNMLHSIRTHLLREDPKTLERSKRILRIKVFLYRLLRLFLLYKLILWLWRSYLA 501
              .:...|.....:.::|.|:...|..:::.|.    ..|.:|......|::.:||.::|
 Frog   434 --AEYMENYCMGTKKYVLNEEMSGLPAARKHLN----KLRNIRYGFNTILVVLIWRVFIA 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FarONP_652021.1 FAR-N_SDR_e 18..328 CDD:187547 114/331 (34%)
FAR_C 379..>410 CDD:296071 7/32 (22%)
far1XP_017948360.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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