DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha68-1 and blw

DIOPT Version :9

Sequence 1:NP_001260426.1 Gene:Vha68-1 / 45668 FlyBaseID:FBgn0265262 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_726243.1 Gene:blw / 37617 FlyBaseID:FBgn0011211 Length:552 Species:Drosophila melanogaster


Alignment Length:606 Identity:127/606 - (20%)
Similarity:219/606 - (36%) Gaps:164/606 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EYGRVYAVSGPVVTAEAMSGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLR 79
            |.|||.::...:.....::.....|:|... ..|.|..:.||.|...:.|:.....:..||.|.|
  Fly    69 ETGRVLSIGDGIARVYGLNNIQADEMVEFS-SGLKGMALNLEPDNVGVVVFGNDKLIKQGDIVKR 132

  Fly    80 TGKPLSVELGPGIMGSIFDGIQRPLRDIGVMTNSIYIPKGVNTTALSRSEMWEFNPLNVRVGSHI 144
            ||..:.|.:|..::|.:.|.:                                        |:.|
  Fly   133 TGAIVDVPVGDELLGRVVDAL----------------------------------------GNAI 157

  Fly   145 TGGDLYGVVHENTLVKQRMIVAPRAKGTVRYIAPAGNYNLEDIVLETEFDGEITKHTMLQVWPVR 209
            .|   .|.:  ||  |.|..|..:|.|.:                                    
  Fly   158 DG---KGAI--NT--KDRFRVGIKAPGII------------------------------------ 179

  Fly   210 QPRPVTEKLPANHPLFTGQRVLDSLFPCVQGGTTAIPGAFGCGK------TVISQALSKYSNSD- 267
             ||     :....|:.||.:.:|||.|..:|....|.|....||      |:|:|.....:..: 
  Fly   180 -PR-----VSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKRFNEAQDES 238

  Fly   268 ---VIIYVGCGERGNEMSEVLRDFPELTCEIDGVTES-IMKRTALVANTSNMPVAAREASIYTGI 328
               ..|||..|::.:.::::::          .:|:| .|..:.:|:.|::.....:..:.|:|.
  Fly   239 KKLYCIYVAIGQKRSTVAQIVK----------RLTDSGAMGYSVIVSATASDAAPLQYLAPYSGC 293

  Fly   329 TLSEYFRDMGYNVAMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLATFYERAGRVK 390
            .:.|||||.|.:..::.|..|:.|.|.|::|..|...|....||.   ||.:||   .|||.::.
  Fly   294 AMGEYFRDKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAKMS 355

  Fly   391 -CLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINWLISYS 452
             .:|.    ||::.:..:....||.|..:.:..:.|.  |:|  |:.:|..:...|:||..:|.|
  Fly   356 PAMGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKGIRPAINVGLSVS 414

  Fly   453 KYMRALDEYYDKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKVTLEVAKLLKDDFL 517
            :...|......|.      :...:|..|.:..:::...|. |....|.|.::.....:|  .:.|
  Fly   415 RVGSAAQTKAMKQ------VAGSMKLELAQYREVAAFAQF-GSDLDAATQQLLNRGVRL--TELL 470

  Fly   518 QQNSYSPY---DRVCPFY-------------KTVGMLRNIMAFYETARHAVESTAQSDNKITWNT 566
            :|..|.|.   |:|...|             |.....:..:...:|:..|:..|...|       
  Fly   471 KQGQYVPMAIEDQVAVIYCGVRGHLDKMDPAKITKFEKEFLQHIKTSEQALLDTIAKD------- 528

  Fly   567 IRESMGGIMYQLSSMKFKDPV 587
                  |.:.:.|..|.||.|
  Fly   529 ------GAISEASDAKLKDIV 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha68-1NP_001260426.1 V-ATPase_V1_A 15..606 CDD:273411 127/606 (21%)
blwNP_726243.1 PRK09281 46..552 CDD:236448 127/606 (21%)
ATP-synt_ab_N 68..134 CDD:280947 16/65 (25%)
F1_ATPase_alpha 136..417 CDD:238552 82/388 (21%)
ATP-synt_ab_C 426..520 CDD:278722 17/102 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454781
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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