DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dom and RAD54L

DIOPT Version :10

Sequence 1:NP_001286676.1 Gene:dom / 45655 FlyBaseID:FBgn0020306 Length:3233 Species:Drosophila melanogaster
Sequence 2:NP_003570.2 Gene:RAD54L / 8438 HGNCID:9826 Length:747 Species:Homo sapiens


Alignment Length:1162 Identity:227/1162 - (19%)
Similarity:360/1162 - (30%) Gaps:501/1162 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   830 RRKLAP-----RDPELDSDDDST----AVDSTEESEDAATEDEE--------DLSTVKTDTDMEE 877
            ||.|||     |.||..|.||..    .|...:....:.|:.:|        .||.:.......:
Human     2 RRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTNQPPCLD 66

  Fly   878 QDEQEDGLKSLMA----------DADATSGAAGSGSTAGASGNKDDMLNDAAALAE--------S 924
            ..:.|..::|:::          .....|.|.|...........|.:..||..|.|        .
Human    67 SSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVLYEPPPLSAHDQ 131

  Fly   925 LQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWL-VTMNERKLNG----ILADEMGLGKTIQT 984
            |:.....|....||.|:   |...||.:|..|:.:| ..:..|::.|    |:|||||||||:|.
Human   132 LKLDKEKLPVHVVVDPI---LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQC 193

  Fly   985 IALLAHLACAKGNWGPHL----IVVPSSVMLNWEMEFKKWCPG-FKILTYYGSQK---ERKLKRV 1041
            |.|:..|........|.:    :|.|||::.||..|..||..| .:.|...|..|   ::||:  
Human   194 ITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLE-- 256

  Fly  1042 GWTKPNAFHVCITSYKLVVQDQQSFR-------RKKWKYLILDEAQNIKNFKSQRWQLLLNFSTE 1099
            |:.......|   |..:::...::||       :.....:|.||...:||.::|.:|.|.:.:|.
Human   257 GFMNQRGARV---SSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS 318

  Fly  1100 RRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPM-----TGMIEGNMEYNETLITR 1159
            ||:|::|||:||||:|.:||:||:...:..:..|||:.|..|:     ....|.:.:..|..:..
Human   319 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE 383

  Fly  1160 LHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQTGNL-LSVIN 1223
            |..::...|:||....:.|.:|.|.|.|:.|||:..|..||:.|:.:||..|.|..|.: :|.::
Human   384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLS 448

  Fly  1224 VLMQLRKVCNHPNMFEARPTISPFQMDGITFHTPRLVCDIMEYDPFTQINLETLNLLLLHLEQTM 1288
            .:..|:|:||||.:.                           ||                     
Human   449 SITSLKKLCNHPALI---------------------------YD--------------------- 465

  Fly  1289 TAYVSHKSRLLAPPRKLIEDIDTAPLPAPRCPNGKYRFHIRVRSAELAQRIKLNAVKVGASPAMR 1353
                           |.:|:.|..                                 |||     
Human   466 ---------------KCVEEEDGF---------------------------------VGA----- 477

  Fly  1354 LEGSKIMPMRNLLPSGRVLKRVSASINPVNMALKPVVINSVVTTTSSSTTASSPTGALSVLSNSK 1418
                     .:|.|.|...|           ||:|.:                            
Human   478 ---------LDLFPPGYSSK-----------ALEPQL---------------------------- 494

  Fly  1419 LLGARSQINAPTPAKVAKTMQDGKPFFYLTPATNSGAAGARLTLTSKTTASASTTTSRTTVTAST 1483
                                                                             
Human   495 ----------------------------------------------------------------- 494

  Fly  1484 TSGQQLIRDPIVKDLATHVKSTVQKQSIANGKTEPEEETEAEDPYKVQELIQMRKEQRLAALKRM 1548
             ||:.|:.|.|                                                      
Human   495 -SGKMLVLDYI------------------------------------------------------ 504

  Fly  1549 AMINRRRTDATPIYGEDCREAIQRCMQATRSLKRSTWQTRGYANCCTAMAHRNGWSLNHLLKSFE 1613
                                     :..|||                                  
Human   505 -------------------------LAVTRS---------------------------------- 510

  Fly  1614 ERCADLKPVFANFVIYVPSVCAPRIRRYVQNLSSTHWQHEQRIENIVDQALRPKLALLHPIISEM 1678
             |.:|                                                            
Human   511 -RSSD------------------------------------------------------------ 514

  Fly  1679 TTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGST 1743
                                            :|::.:..|:.||:.|.......::|:||||:.
Human   515 --------------------------------KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTM 547

  Fly  1744 RVEQRQILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQ 1807
            .:::|..::||||. ....|.|:||:::||.|:||.||:.::.:|.||||..|.||..|..|.||
Human   548 SIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 612

  Fly  1808 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSE----QD 1868
            .:..:||||:|..|||..|.::.:.|:.||...::.......:|....:|:||.::::.    .|
Human   613 KKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHD 677

  Fly  1869 ESSQEKSENKDRIVATTTLSDTPSTVVE----TEKQSLRAFEHALAAAEDEQDVQAT 1921
            .....:..|..:|......||..|.:..    |:|..||  :..|.||.|......|
Human   678 RLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLR--DEVLQAAWDAASTAIT 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
domNP_001286676.1 HSA 543..614 CDD:214727
HepA 692..>1235 CDD:440319 131/465 (28%)
DEXQc_SRCAP 949..1171 CDD:350761 75/246 (30%)
SF2_C_SNF 1685..1817 CDD:350180 41/132 (31%)
DISARM_DrmD_b <1702..>1936 CDD:468472 69/229 (30%)
HEC1 <1858..>2031 CDD:444066 17/72 (24%)
SP1-4_N 2486..>2819 CDD:425404
RAD54LNP_003570.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41 12/38 (32%)
Required for chromatin remodeling, strand pairing activities and coupling of ATPase activity. /evidence=ECO:0000250 2..9 5/6 (83%)
HepA <97..647 CDD:440319 189/978 (19%)
DEXHc_RAD54A 153..395 CDD:350825 75/246 (30%)
DEGH box 296..299 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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