DRSC/TRiP Functional Genomics Resources

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Protein Alignment dom and smarcad1

DIOPT Version :10

Sequence 1:NP_001286676.1 Gene:dom / 45655 FlyBaseID:FBgn0020306 Length:3233 Species:Drosophila melanogaster
Sequence 2:NP_001015697.1 Gene:smarcad1 / 548414 XenbaseID:XB-GENE-492700 Length:1003 Species:Xenopus tropicalis


Alignment Length:1448 Identity:327/1448 - (22%)
Similarity:511/1448 - (35%) Gaps:609/1448 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   487 PGTPTSGSLLSPALGGGSGTPNSAAQEFSFKAKQEVYVMQRISELQREGLWTERRLPKLQEPSRP 551
            |.||.:..:.:|:|               ||..:.|..:.  |:.:.|...::.:.....:.|.|
 Frog    45 PETPEAKRVNNPSL---------------FKKDKGVSFLD--SDSENEDHQSKSKFSSTHQQSHP 92

  Fly   552 K------------AHWDYLLEEMVWLAADFAQERKWKKNAAKKCAKMVQKYFQDKATAAQRAEKA 604
            :            :..|||                    |.|:          ..|:.||..:.:
 Frog    93 REENGTSDSVTDDSEDDYL--------------------AVKR----------PSASTAQVKDGS 127

  Fly   605 QELQLKRVASFIAREVKSFWSNVEKLVEYKHQT---------------KIEEKRKQALDQHLSFI 654
            :...|:|:.....::      |.::|::....|               |....||:.|       
 Frog   128 KYKNLQRLKEIFPKQ------NNDELLKLIESTSTLDGAVAAGVVLFNKEGSSRKRKL------- 179

  Fly   655 VDQTEKFSQQLVEGMN------KSVADTPSLNSSRLTSPKRESDDDFRPESGSEDDEETIAKAEE 713
             |:..|.|..:.||:|      |.:....|.|.|.|      |:||:      |..|.::.|.:.
 Frog   180 -DEVPKDSSPVHEGINGQTKKKKKIDRVSSDNDSSL------SEDDW------EKQEASVKKLQR 231

  Fly   714 DAADV-KEEVTALAKESEMDFDDFLNDLPPGYLENRDKLMKEEQSSAIKTETPDD-SDDSEFEAK 776
            ...|: |||:..:.:|.:..|.:.|..|         ||..|:::.|::.....: |:..||   
 Frog   232 HFPDLDKEELREVLQEHDWSFHEALEAL---------KLFAEDETDALQNAAKKEVSNGKEF--- 284

  Fly   777 EASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSVEQLLAKYKSEQPPSPKRRKLAPRDPELD 841
            ..|:.::|..|.:.:|.|      ..::..|.|.:..:....||..    :.||           
 Frog   285 SRSNKNDNKSSAKAKANQ------NSNKAMAQNGVKKKGKGKKYSE----NAKR----------- 328

  Fly   842 SDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQDEQEDGLKSLMADADA------------ 894
               |:..::|.|.:.||.:..:||.|:  .|..:||  |.:..:.|.:.||..            
 Frog   329 ---DTRDLESEESASDAGSCLDEDYSS--GDEKLEE--EYKTKILSFLQDASLDELYLIPHCSHK 386

  Fly   895 -----------TSGAAGSGSTAGASGNKDDMLNDAAALAE------SLQPKGNTLSST------- 935
                       :|..:.......::|..:|::.|...|.:      .|..|...:|.|       
 Frog   387 KAQKITELRPFSSWESLFEKMTKSNGLSEDLIWDCQTLIKEREVVMKLMNKCEEISRTLTKQVTQ 451

  Fly   936 ---------NVVTPVPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHL 991
                     |:..|........|:.||.|||:||..:::.|:|.|||||||||||:|.||.||||
 Frog   452 LTEDGECGWNIEQPSIMSENLVLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHL 516

  Fly   992 ACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVG-WTKPNAFHVCITS 1055
             ...|:.||||:|||:|.|.||..||.:|||...||.|||||:|||..|.. ..|...|:|.:|:
 Frog   517 -YVTGDSGPHLVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTT 580

  Fly  1056 YKLVV---QDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELW 1117
            |...:   :|:..|||.|..:.:.||...:||..:.|:|.|:..:...||||||||:||:|:||.
 Frog   581 YNCAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELM 645

  Fly  1118 SLMHFLMPYVFSSH-REFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPFLLRRLKKEVEKQMP 1181
            ||::|:||::|||. .|.|..||:......|..: :.:..|....::::||:|||:|.||.||:|
 Frog   646 SLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTI-FEKERIAHAKQIMKPFILRRVKSEVLKQLP 709

  Fly  1182 KKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCNHPNMFEARPTISP 1246
            .|.:.:..|::|.:|..||.|.:::.| :....|.....:.||:|.|||:.|||           
 Frog   710 PKQDKIKFCQMSKKQEQLYSDLLNKLK-KSIDATEKNSELCNVMMHLRKMANHP----------- 762

  Fly  1247 FQMDGITFHTPRLVCDIMEYDPFTQINLETLNLLLLHLEQTMTAYVSHKSRLLAPPRKLIEDIDT 1311
                                              |||.:.    |.:.:.|.:            
 Frog   763 ----------------------------------LLHRQY----YTADRLRTM------------ 777

  Fly  1312 APLPAPRCPNGKYRFHIRVRSAELAQRIKLNAVKVGASPAMRLEGSKIMPMRNLLPSGRVLKRVS 1376
                                                         ||:|                
 Frog   778 ---------------------------------------------SKLM---------------- 781

  Fly  1377 ASINPVNMALKPVVINSVVTTTSSSTTASSPTGALSVLSNSKLLGARSQINAPTPAKVAKTMQDG 1441
                                                                             
 Frog   782 ----------------------------------------------------------------- 781

  Fly  1442 KPFFYLTPATNSGAAGARLTLTSKTTASASTTTSRTTVTASTTSGQQLIRDPIVKDLATHVKSTV 1506
                                                            :::|      ||     
 Frog   782 ------------------------------------------------LKEP------TH----- 787

  Fly  1507 QKQSIANGKTEPEEETEAEDPYKVQELIQMRKEQRLAALKRMAMINRRRTDATP-IYGEDCREAI 1570
                                                             .||.| :..||.    
 Frog   788 -------------------------------------------------CDANPDLIFEDM---- 799

  Fly  1571 QRCMQATRSLKRSTWQTRGYANCCTAMAHRNGWSLNHLLKSFEERCADLKPVFANFVIYVPSVCA 1635
                                                .::..||                      
 Frog   800 ------------------------------------EVMTDFE---------------------- 806

  Fly  1636 PRIRRYVQNLSSTHWQHEQRIENIVDQALRPKLALLHPIISEMTTKFPDPRLIQY--------DC 1692
                                               ||.:.:|.||      |.||        |.
 Frog   807 -----------------------------------LHRLCNEFTT------LSQYKLEKELILDS 830

  Fly  1693 GKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNG 1757
            ||...:::||..:|..|.||::|:|.|.|||::|.||.:|.|.|:||||.|::.:|..|::.||.
 Frog   831 GKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNT 895

  Fly  1758 DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTI 1822
            |..||.|:|||::||:|||||.|:.||.:|.|.||..|.||:|||||:|||::|.:.:|:.:.||
 Frog   896 DMDIFIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTI 960

  Fly  1823 EVNILKKANQK-RMLSDM 1839
            |.::||.:.|| |:..||
 Frog   961 EESMLKISQQKLRLEQDM 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
domNP_001286676.1 HSA 543..614 CDD:214727 12/82 (15%)
HepA 692..>1235 CDD:440319 184/594 (31%)
DEXQc_SRCAP 949..1171 CDD:350761 103/226 (46%)
SF2_C_SNF 1685..1817 CDD:350180 66/139 (47%)
DISARM_DrmD_b <1702..>1936 CDD:468472 70/139 (50%)
HEC1 <1858..>2031 CDD:444066
SP1-4_N 2486..>2819 CDD:425404
smarcad1NP_001015697.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 15..130 20/131 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 172..235 20/82 (24%)
CUE 223..259 CDD:270465 9/35 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..351 21/103 (20%)
HepA <471..974 CDD:440319 226/903 (25%)
DEGH box 605..608 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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