DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dom and brm

DIOPT Version :9

Sequence 1:NP_001286676.1 Gene:dom / 45655 FlyBaseID:FBgn0020306 Length:3233 Species:Drosophila melanogaster
Sequence 2:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster


Alignment Length:1834 Identity:395/1834 - (21%)
Similarity:616/1834 - (33%) Gaps:757/1834 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   376 ISTKLPAAVVQLTQQGHIPGRPL-----------GGRHGMVFGQIPAPP---------------- 413
            ||.::..| :|..||...||.|:           |.:|.   ||.|.||                
  Fly   198 ISMQMQQA-LQAAQQQPPPGPPIGPPGAPGGPPPGSQHA---GQPPVPPQQQQQPPPSAGTPPQC 258

  Fly   414 --AAVGNPSVPLVPG--------------GTPLLPCNTSAGS----TALRRPQGQNNASSGSAAA 458
              ....||..|.|||              |.||.|.....|.    ...:.||.|...|.     
  Fly   259 STPPASNPYGPPVPGQKMQVAPPPPHMQQGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQ----- 318

  Fly   459 SGGGGSLTPTP------LYTGNGPAALGGSG---------------GLTPGTPTSGSLLSPALGG 502
                   .|.|      |..|..|.::|.||               |..||.|....:..|  ||
  Fly   319 -------PPPPEPHQHQLPNGGKPLSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQP--GG 374

  Fly   503 G-------SGTPNSAAQEFSFKAK----QEVYVMQRISELQREGLWTERRLPKLQEPSRPKAHW- 555
            |       :|.|.......:..||    ..:.::|     :||.....|...::||..|..|.. 
  Fly   375 GPQRQVPPAGMPMPKPNRITTVAKPVGLDPITLLQ-----ERENRIAARISLRMQELQRLPATMS 434

  Fly   556 -DYLLEEMVWLAA----DFAQERKW------KKNAAKKCAKMVQKYFQDK------ATAAQRAEK 603
             |..|:..:.|.|    :|.::.:.      :::...:.|..::.|.:.|      |.|.::.||
  Fly   435 EDLRLQAAIELRALRVLNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEK 499

  Fly   604 AQELQLKRVASFIAREVKSFWSNVEKLVEYKHQTKIEEKRKQALDQHLSFI---------VDQTE 659
            .|:|:.:|                              ||:|   :||.|:         :.:..
  Fly   500 QQKLEAER------------------------------KRRQ---KHLEFLAAVLQHGKDLREFH 531

  Fly   660 KFSQQLVEGMNKSVADTPSLNSSRLTSPKRESDDDFRPESGSEDDEETIAKAEEDAADVKEEVTA 724
            :.::..:..|||:|.:..: |:.|....::|..:..|......:|||...|..:...|.:     
  Fly   532 RNNKAQLARMNKAVMNHHA-NAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKR----- 590

  Fly   725 LAKESEMDFDDFLNDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASDDDENTISKQ 789
            ||         ||......|:.|..:::|:.:...:|                         .|:
  Fly   591 LA---------FLLSQTDEYISNLTQMVKQHKDDQMK-------------------------KKE 621

  Fly   790 EEAEQEIDHKKE---------IDELEADNDLS---VEQLLA-KYKSEQPPSPKR-RKLAPRDPEL 840
            ||.::.|..|||         |||.....|:.   |||... |...:..|..|. .:.....|..
  Fly   622 EEGKRLIQFKKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGW 686

  Fly   841 DSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGSTA 905
            |..||..  ||...::|...:.||..:..:..||..:....::..|.|:..|..           
  Fly   687 DWIDDEE--DSCGSNDDHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKV----------- 738

  Fly   906 GASGNKDDMLNDAA----ALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLVTMNER 966
                 :||......    ::|.::..|        ||.....::..:|:|||..||:|||::...
  Fly   739 -----EDDEYRTEEQTYYSIAHTIHEK--------VVEQASIMVNGTLKEYQIKGLEWLVSLYNN 790

  Fly   967 KLNGILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYG 1031
            .||||||||||||||||||:|:.:|...|...||:||:||.|.:.||.:||:||.|...:::|.|
  Fly   791 NLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKG 855

  Fly  1032 SQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLL-LN 1095
            |.:.|:|.: ...:...|:|.:|:|:.|::|:....:.:|||:|:||...:||...:..|:| .:
  Fly   856 SPQGRRLLQ-NQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTH 919

  Fly  1096 FSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPM--TG-MIEGNMEYNETLI 1157
            :....|||||||||||.|.|||:|::||:|.:|.|...|::||:.|.  || .:|.|.|....:|
  Fly   920 YIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILII 984

  Fly  1158 TRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQT------- 1215
            .|||||:|||||||||||||.|:|.|.|::|.|.:|..||.||:...|:.    .|.|       
  Fly   985 RRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKG----VLLTDGSEKGK 1045

  Fly  1216 ---GNLLSVINVLMQLRKVCNHPNMFEARPTISPFQMDGITFHTPRLVCDIMEYDPFTQINLETL 1277
               |...:::|.::||||:||||.||:                                      
  Fly  1046 HGKGGAKALMNTIVQLRKLCNHPFMFQ-------------------------------------- 1072

  Fly  1278 NLLLLHLEQTMTAYVSHKSRLLAPPRKLIEDIDTAPLPAPRCPNGKYRFHIRVRSAELAQRIKLN 1342
                 |:|:                                    ||..|               
  Fly  1073 -----HIEE------------------------------------KYCDH--------------- 1081

  Fly  1343 AVKVGASPAMRLEGSKIMPMRNLLPSGRVLKRVSASINPVNMALKPVVINSVVTTTSSSTTASSP 1407
                                                                             
  Fly  1082 ----------------------------------------------------------------- 1081

  Fly  1408 TGALSVLSNSKLLGARSQINAPTPAKVAKTMQDGKPFFYLTPATNSGAAGARLTLTSKTTASAST 1472
                                                                             
  Fly  1082 ----------------------------------------------------------------- 1081

  Fly  1473 TTSRTTVTASTTSGQQLIRDPIVKDLATHVKSTVQKQSIANGKTEPEEETEAEDPYKVQELIQMR 1537
                       |.|..::..|                                |.|:|.      
  Fly  1082 -----------TGGHGVVSGP--------------------------------DLYRVS------ 1097

  Fly  1538 KEQRLAALKRMAMINRRRTDATPIYGEDCREAIQRCMQATRSLKRSTWQTRGYANCCTAMAHRNG 1602
                                                                             
  Fly  1098 ----------------------------------------------------------------- 1097

  Fly  1603 WSLNHLLKSFEERCADLKPVFANFVIYVPSVCAPRIRRYVQNLSSTHWQHEQRIENIVDQALRPK 1667
                                                                             
  Fly  1098 ----------------------------------------------------------------- 1097

  Fly  1668 LALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYH 1732
                                     ||.:.:||:|.:||...||||:|.|||:.:.::|.:|.:.
  Fly  1098 -------------------------GKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWR 1137

  Fly  1733 GHIYLRLDGSTRVEQRQILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDA 1796
            ...||||||:|:.|.|..|:.:||. ...:|.|:||||:||:|:||..||||:.:||||||..|.
  Fly  1138 QFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDL 1202

  Fly  1797 QAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFT 1861
            |||||.|||||..:|.:.||::..::|..||..|..|..:.:..|:.|.|......|...:.|.|
  Fly  1203 QAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQT 1267

  Fly  1862 MEQSEQDESSQEKSENKDRIVATTTLSDTPSTVVETEKQSLRAFEHALAAAEDEQDVQATKTAKA 1926
            :...:.:|..:|.....|.::                         .:..|..|::::..|...|
  Fly  1268 ILHQDDNEEEEENEVPDDEMI-------------------------NMMIARSEEEIEIFKRMDA 1307

  Fly  1927 EVAADLAEFDENIPIATEDPNAEGGPQVELSKADLEMQNLVKQLSPIERYAMRF----------- 1980
            |             ...||.....|.:..:.:::|. ..|.|....:||:..::           
  Fly  1308 E-------------RKKEDEEIHPGRERLIDESELP-DWLTKDDDEVERFHYQYDEDTILGRGSR 1358

  Fly  1981 ----VEETGAAWTAEQLRAAE--AELEAQKREWEANRLAAMHKEEELLKQETEAEEMLTYSRKDS 2039
                |:.|.:....|.|:|.:  ||.:.::.|.::.|.....|..   |:|::.:.::...|:..
  Fly  1359 QRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKRKNR---KEESDDDSLILKRRRRQ 1420

  Fly  2040 SNQVWISRNTMEQM 2053
            :    :.:.:.:||
  Fly  1421 N----LDKRSKKQM 1430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
domNP_001286676.1 HSA 543..614 CDD:214727 19/88 (22%)
ASF1_hist_chap <674..831 CDD:304562 34/170 (20%)
FAM176 <824..>868 CDD:291517 11/44 (25%)
SNF2_N 952..1238 CDD:278600 136/299 (45%)
DEXDc 969..1108 CDD:238005 61/139 (44%)
Helicase_C 1692..1806 CDD:278689 58/114 (51%)
brmNP_001261906.1 QLQ 172..202 CDD:214931 2/3 (67%)
Drf_FH1 251..390 CDD:283903 33/152 (22%)
HSA 501..573 CDD:214727 17/105 (16%)
BRK 649..693 CDD:197800 11/43 (26%)
PHA02934 687..>824 CDD:165245 49/162 (30%)
SNF2_N 776..1071 CDD:278600 136/299 (45%)
DEXDc 793..932 CDD:238005 61/139 (44%)
Helicase_C 1097..1212 CDD:278689 58/275 (21%)
SnAC 1304..1375 CDD:291293 13/84 (15%)
Bromo_SNF2L2 1425..1530 CDD:99947 2/6 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467168
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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