DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dom and swr1

DIOPT Version :9

Sequence 1:NP_001286676.1 Gene:dom / 45655 FlyBaseID:FBgn0020306 Length:3233 Species:Drosophila melanogaster
Sequence 2:NP_001342781.1 Gene:swr1 / 3361561 PomBaseID:SPAC11E3.01c Length:1288 Species:Schizosaccharomyces pombe


Alignment Length:1587 Identity:534/1587 - (33%)
Similarity:766/1587 - (48%) Gaps:457/1587 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   499 ALGGGSGTPNSAAQEFSFKAKQEVYVMQRISELQREGLWTERRLPKLQE-PSR---PKAHWDYLL 559
            :|..|...|.. |:|..|:   ||.:..||:|.:::|.:|.....:|:: ||.   |.::.|.||
pombe    62 SLEDGDHDPKE-AKELVFR---EVQLRHRINEFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLL 122

  Fly   560 EEMVWLAADFAQERKWKKNAAKKCAKMVQKYFQDKATAAQRAEKAQELQLKRVASFIAREVKSFW 624
            ..:...|.....:||.:.:.:::.:.|:..:|:..:.|.::..|.::.:::.:|...|.|::..|
pombe   123 SHVNGYARSMHNDRKVRASRSRRISGMILAHFKRLSGADEKKAKEEDKRIRLLAKRTAWEIRKKW 187

  Fly   625 SNVEKLVEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQLVEGMNKSVADTPSLNSSRLTSPKR 689
            ..:|:.|..:...:..|.::.|..:.|:.|:    |.|..|:|                      
pombe   188 KVIEREVRRRRAERAAEAQRVAGKEQLANIL----KHSTDLLE---------------------- 226

  Fly   690 ESDDDFRPESGSEDDEETIAKAEEDAADVKEEVTALAKESEMDFDDFLNDLPPGYLENRDKLMKE 754
                                 |..:.|::  .::|...||.:|: ::|       |:..|.|:..
pombe   227 ---------------------ARIERANI--NISAQTSESAVDW-NYL-------LKTSDDLLSV 260

  Fly   755 EQSSAIKTETPD--DSDDSEFEAKEASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSVEQLL 817
            ::.. :|...||  .:.:.|.||:|.| |||...|:.||.|              |.|::.|..|
pombe   261 DELK-LKYSNPDLIKNIEREEEAEETS-DDEPLSSEDEENE--------------DEDITEESNL 309

  Fly   818 AKYK--------SEQPPSPK--RRKLAPRDPELDSDDDSTAVDSTEESEDAATEDEEDLST-VKT 871
            .|.|        ::.|||.:  ||..|.:.....||.|...:          ...:||::. |.|
pombe   310 RKRKVSDKTRVVNKHPPSLRRSRRFFAKKSYNHVSDLDGEVI----------VMKKEDITDGVST 364

  Fly   872 DTDMEEQDEQEDGLK--------SLMADADATS---------GAAGSGSTAGAS-GNKDDMLNDA 918
            ..|:.:.|:.|..|.        ||:.:.|..|         |.|...|.||.| ..|.|     
pombe   365 KKDLNDGDQNEVPLHDTGSSSSLSLLYNEDVASKKKRRVNDDGLARKKSIAGISEQRKFD----- 424

  Fly   919 AALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQ 983
                   :|.|:.:...|.: .||||.:.:|||||..||:||..:::...|||||||||||||||
pombe   425 -------EPNGSPVLHANKI-QVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQ 481

  Fly   984 TIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNA 1048
            ||||||||||.|.|||||||:||:||||||||||||:.||||||||||:.:|||.||.||.||:.
pombe   482 TIALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDT 546

  Fly  1049 FHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDL 1113
            :|||||||:||:||.|.||||||:|:|||||.|||||:|||||.||||:.|.|||||||||||:|
pombe   547 WHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNL 611

  Fly  1114 MELWSLMHFLMP-------YVFSSHREFKEWFSNPMTGMIEGNMEYNE---TLITRLHKVIRPFL 1168
            :|||||::||||       ..|::.::|::|||.||..:||...:.|.   ..:.:||:|:||:|
pombe   612 VELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYL 676

  Fly  1169 LRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCN 1233
            |||||.|||||||.|||||:.|:||.|||:||:||::||:|||.|.:||.:|:||.|||||||||
pombe   677 LRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSIINCLMQLRKVCN 741

  Fly  1234 HPNMFEARPTISPFQMDGITFHTPRLVCD-----------IMEYDPFTQINLETLNLLLLHLEQT 1287
            |||:.|.||.::.|.:      ....:.|           ::..:|.|:::|.||.|:....| .
pombe   742 HPNLHEERPIVTSFAL------RRSAIADLEIKDLLVRKRLLHEEPMTKLDLSTLRLIRTDSE-A 799

  Fly  1288 MTAYVSHKSRLLAPPRKLIEDIDTAPLPAPRCPNGKYRFHIRVRSAELAQRIKLNAVKVGASPAM 1352
            ...:||.:...|                   |....|                            
pombe   800 FDTFVSDELNSL-------------------CATNAY---------------------------- 817

  Fly  1353 RLEGSKIMPMRNLLPSGRVLKRVSASINPVNMALKPVVINSVVTTTSSSTTASSPTGALSVLSNS 1417
                                .|:|..:                                      
pombe   818 --------------------NRISTFL-------------------------------------- 824

  Fly  1418 KLLGARSQINAPTPAKVAKTMQDGKPFFYLTPATNSGAAGARLTLTSKTTASASTTTSRTTVTAS 1482
                 |.||:           ::.||                                       
pombe   825 -----RMQID-----------EECKP--------------------------------------- 834

  Fly  1483 TTSGQQLIRDPIVKDLATHVKSTVQKQSIANGKTEPEEETEAEDPYKVQELIQMRKEQRLAALKR 1547
                             ...|.:..|:...|               |:.       :::|..|..
pombe   835 -----------------CQFKKSNFKEHFQN---------------KIY-------QEQLDKLNF 860

  Fly  1548 MAMINRRRTDATPIYGEDCREAIQRCMQATRSLKRSTW----------QTRGYANCCTAMAHRNG 1602
            ...:|..:...:||||.:.....::..:.:.|:..:.:          .|:...:|         
pombe   861 QKYLNESKCSHSPIYGSNLIRLAEKLPKHSTSIDYTLYAKDDPLYLLNTTKALRSC--------- 916

  Fly  1603 WSLNHLLKSFEERCADLKPVFANF--------VIYVPSVCAPRIRRYVQNLSSTHWQHEQRIENI 1659
                  :.|.|||.:::|.:...|        |:.:|.:....|.|                 ::
pombe   917 ------ILSTEERASNMKEIIQRFACITPKAVVVDLPELFCKTIPR-----------------DL 958

  Fly  1660 VDQALRPKLALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDV 1724
            :.:..| |:..||...:.:...|||.||:||||||||.:||||:.|..|||||||||||||:||:
pombe   959 LYEVSR-KINPLHQASTRLAIAFPDKRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDI 1022

  Fly  1725 LEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSD 1789
            ||.|||.|||.||||||:|::||||||.||||.|.:|..|||||||||:||||||||||||||||
pombe  1023 LEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSD 1087

  Fly  1790 WNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSS 1854
            |||.:|||||||.||||||||||||||:||.|:|.|:|::|||||||..:.|:||.|||.:|:.:
pombe  1088 WNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKA 1152

  Fly  1855 TIKDLFTMEQSEQDESSQEKSENKDRIVATTTLSDTPSTVVETEKQSLRAFEHALAAAEDEQDVQ 1919
            .:.|||.::    |||.::...:          ||:.||..|..      :|.||||||||:|||
pombe  1153 DVLDLFDLD----DESLKKVKAD----------SDSGSTKNEEN------WEVALAAAEDEEDVQ 1197

  Fly  1920 ATKTAKAEVAADLAEFDE-----------NIPIATED--PNAEGGPQVELS--------KADLEM 1963
            |.:.|:.|.|.:..||.|           :.|::::.  |..|.....|.|        :::|| 
pombe  1198 AAQVARKESALEQTEFSETSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSELE- 1261

  Fly  1964 QNLVKQLSPIERYAMRFVEETGAA--W 1988
            ::|.:.:..|:.|.:.|:|:.|.:  |
pombe  1262 EDLDETVGHIDEYMISFLEQEGTSDEW 1288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
domNP_001286676.1 HSA 543..614 CDD:214727 14/74 (19%)
ASF1_hist_chap <674..831 CDD:304562 34/168 (20%)
FAM176 <824..>868 CDD:291517 11/45 (24%)
SNF2_N 952..1238 CDD:278600 198/295 (67%)
DEXDc 969..1108 CDD:238005 111/138 (80%)
Helicase_C 1692..1806 CDD:278689 89/113 (79%)
swr1NP_001342781.1 HSA 116..177 CDD:311466 10/60 (17%)
SNF2_N 450..745 CDD:306645 197/294 (67%)
SNF2_N <991..>1145 CDD:331286 116/153 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 407 1.000 Domainoid score I95
eggNOG 1 0.900 - - E2759_KOG0391
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001654
OrthoInspector 1 1.000 - - oto100577
orthoMCL 1 0.900 - - OOG6_101779
Panther 1 1.100 - - LDO PTHR45685
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1426
SonicParanoid 1 1.000 - - X2889
TreeFam 00.000 Not matched by this tool.
98.840

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