DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdp1 and hlfa

DIOPT Version :9

Sequence 1:NP_729301.1 Gene:Pdp1 / 45588 FlyBaseID:FBgn0016694 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001070802.1 Gene:hlfa / 768192 ZFINID:ZDB-GENE-061013-159 Length:294 Species:Danio rerio


Alignment Length:296 Identity:125/296 - (42%)
Similarity:157/296 - (53%) Gaps:55/296 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 LKARFQPASSG---------RKSPF---LGFICKSNGKSTSNSKEIICPDDKYKEEGDIWNVEAQ 440
            :.|.|.|.:.|         .|.||   .||     ||.....|       |.:::....|. .|
Zfish    10 INATFLPPTHGVLKSLLENPMKLPFHHDEGF-----GKEKEKEK-------KLEDDASTLNT-PQ 61

  Fly   441 TAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIPDGLPGTHLGHSS---------------- 489
            :|||||.||||||||:||....:|.||:|||.|||||.. |.:.....|                
Zfish    62 SAFLGPTLWDKTLPYNADNFQLEYMDLEEFLLENNIPAN-PQSEQSQPSQPPLQPPSAPPTPSVV 125

  Fly   490 GLGHRSDSLGHAAGLSLGLGHITTK-----RERSPSPSDCISPDTLN-----PPSPAESTFSFAS 544
            .|.:|.:|..|...::.......|:     ...:|||   |.||::.     .|.||:...|...
Zfish   126 DLSNRDNSSSHNGMVAQNCLQNPTRPGLPASRDTPSP---IDPDSIQVPLAYEPDPADLALSSVP 187

  Fly   545 SGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPDELKDDKYWARRRKNNIAAKRSRDARRQKENQI 609
            ....||||.|.||.|||||||||||:||.|:|::||||:||||||||||||||||||||.|||||
Zfish   188 GQEIFDPRKRKFSAEELKPQPMIKKARKVFIPEDLKDDRYWARRRKNNIAAKRSRDARRLKENQI 252

  Fly   610 AMRARYLEKENATLHQEVEQLKQENMDLRARLSKFQ 645
            |:||.:||||||.|..||..|::|....:..|:|::
Zfish   253 AIRAGFLEKENAALRAEVADLRKELGRCKNVLAKYE 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdp1NP_729301.1 bZIP_HLF 580..639 CDD:269843 42/58 (72%)
coiled coil 581..639 CDD:269843 41/57 (72%)
hlfaNP_001070802.1 bZIP_HLF 223..282 CDD:269843 42/58 (72%)
coiled coil 224..282 CDD:269843 41/57 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586464
Domainoid 1 1.000 87 1.000 Domainoid score I7946
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H31074
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1023460at2759
OrthoFinder 1 1.000 - - FOG0000980
OrthoInspector 1 1.000 - - otm24802
orthoMCL 1 0.900 - - OOG6_107038
Panther 1 1.100 - - O PTHR11988
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5193
SonicParanoid 1 1.000 - - X901
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.740

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