DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdp1 and Cebpa

DIOPT Version :9

Sequence 1:NP_729301.1 Gene:Pdp1 / 45588 FlyBaseID:FBgn0016694 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001274506.1 Gene:Cebpa / 24252 RGDID:2326 Length:395 Species:Rattus norvegicus


Alignment Length:508 Identity:95/508 - (18%)
Similarity:150/508 - (29%) Gaps:169/508 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 QQQQQQHSQHQHQQQHHGHPLHPHHTHQQQQQQQQQQQP-PPQHHQQQQQQHAQQQQQQHHAAQL 219
            :::|::|:|...::   |.|...:.....:.....:.:| ||.....|...||.           
  Rat    13 RRRQRRHAQAGGRR---GSPCRENSNSPMESADFYEAEPRPPMSSHLQSPPHAP----------- 63

  Fly   220 AHTLSSAAV-----AAAAGNTGGNTNPHSIFGTGNFHYKTNNSWTLPTLTYQRIYQENPHYQRNS 279
                |:||.     |..|........|..:.|........:.|..:....:      |..:..:.
  Rat    64 ----SNAAFGFPRGAGPAPPPAPPAAPEPLGGICEHETSIDISAYIDPAAF------NDEFLADL 118

  Fly   280 FMDPQSNAAAAAAAAAASCNAAAVAAAAAVASGNQGSNGNASGNGNAVVAATGNGNGGNPGQNNN 344
            |...:....|.|||..|.            ..|:....|..:|.|.||::|  ..:|..||.   
  Rat   119 FQHSRQQEKAKAAAGPAG------------GGGDFDYPGAPAGPGGAVMSA--GAHGPPPGY--- 166

  Fly   345 NNNGNNSGNSNNNSNNNVSSVQHVANAVAAAVIANEHHNHLNSLKARFQPASSGRKSPFLGFICK 409
                                      ..|||          ..|..|.:|......:|.|     
  Rat   167 --------------------------GCAAA----------GYLDGRLEPLYERVGAPAL----- 190

  Fly   410 SNGKSTSNSKEIICPDDKYKEEGDIWNVEA-QTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSE 473
                     :.::...:..:|:      || |.|..|      ..||..                
  Rat   191 ---------RPLVIKQEPREED------EAKQLALAG------LFPYQP---------------- 218

  Fly   474 NNIPDGLPGTHLGHSS----GLGHRSDSLGHAAGLSLGL--GHITTKRERSPSPSDCISPDTLNP 532
               |...|..| .|:|    ...|....:.|....::.|  ||.|......|||....:......
  Rat   219 ---PPPPPPPH-PHASPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPAMGAAGL 279

  Fly   533 PSPAESTFSFASSGRDFDPRTRAFSDEELKPQPMIK------------KSRKQFVPDELKDDKYW 585
            |.|..|....|.                  |.|.::            |::|..   :...::|.
  Rat   280 PGPGGSLKGLAG------------------PHPDLRTGGGGGGGAGAGKAKKSV---DKNSNEYR 323

  Fly   586 ARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEVEQLKQENMDLR 638
            .||.:||||.::|||..:|:..:...:...|..:|..|.:.||||.:|...||
  Rat   324 VRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLR 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdp1NP_729301.1 bZIP_HLF 580..639 CDD:269843 21/59 (36%)
coiled coil 581..639 CDD:269843 21/58 (36%)
CebpaNP_001274506.1 bZIP_CEBPA 317..377 CDD:269859 21/60 (35%)
coiled coil 319..377 CDD:269859 21/58 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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