DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdp1 and Nfil3

DIOPT Version :9

Sequence 1:NP_729301.1 Gene:Pdp1 / 45588 FlyBaseID:FBgn0016694 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_446179.2 Gene:Nfil3 / 114519 RGDID:620972 Length:462 Species:Rattus norvegicus


Alignment Length:63 Identity:30/63 - (47%)
Similarity:42/63 - (66%) Gaps:0/63 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   569 KSRKQFVPDELKDDKYWARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEVEQLK 631
            :.:::|:|||.||..||.:|||||.||||||:.||..:..:..:...|.:|||||..|:..||
  Rat    61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdp1NP_729301.1 bZIP_HLF 580..639 CDD:269843 26/52 (50%)
coiled coil 581..639 CDD:269843 25/51 (49%)
Nfil3NP_446179.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
bZIP_NFIL3 72..131 CDD:269842 26/52 (50%)
coiled coil 76..127 CDD:269842 24/48 (50%)
Basic motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00978 79..95 11/15 (73%)
Leucine-zipper. /evidence=ECO:0000255|PROSITE-ProRule:PRU00978 99..106 0/6 (0%)
Vert_IL3-reg_TF 130..461 CDD:368956
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..214
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..298
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.