DRSC/TRiP Functional Genomics Resources

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Protein Alignment nompA and qsm

DIOPT Version :10

Sequence 1:NP_524831.2 Gene:nompA / 45587 FlyBaseID:FBgn0016047 Length:1557 Species:Drosophila melanogaster
Sequence 2:NP_652049.1 Gene:qsm / 47065 FlyBaseID:FBgn0028622 Length:414 Species:Drosophila melanogaster


Alignment Length:358 Identity:89/358 - (24%)
Similarity:147/358 - (41%) Gaps:77/358 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1026 CNEEGMEFTIRTPEG-----FLGRIYTYGFY----DRCFFRGNGGTVNVLRLSGPQGYPDCGTQR 1081
            |:|:.|...|..|:.     ...:||..|..    :||..:.: |::.|.|||....| :||..|
  Fly    31 CSEDQMRVDIGLPDAESKDQSAPQIYLEGLKGYPDERCQPQID-GSLAVFRLSLSDFY-ECGVTR 93

  Fly  1082 YGDTLT------NIVVVQFSDNVQ-------TSRDKRYNL----------TCIFRGPGEAVVSSG 1123
            ..:.||      :.::::.:...:       |:....||:          |....|....:|...
  Fly    94 MVNQLTGKKVYYHKIIIESTSGKEIVSVKCITTASPAYNVMMNATTGSSSTSTSSGGIHGLVKRD 158

  Fly  1124 YIGAGSGSPIPIEYLPAENTLSSKVRLSI--LYQGRPTT---TIAVGDPLTFRLEAQD------- 1176
            .:.||...|..:|...:....:.:.||||  ...|:..|   |:..|.|||..:...:       
  Fly   159 VLPAGFQEPEDLEITTSLTKRAPEPRLSIGVSQDGQKFTRDLTVKSGTPLTMEINLDEDSAPVYG 223

  Fly  1177 -GYNH--VTDIFATNVVARDPYSGRSIQLIDRFGCPVDPFVFPELDKLRDGDTLEARFNAFKIPE 1238
             |.|:  |||...:           |..||.: ||.|||::|...:.: |||.|.|:|.|||.|:
  Fly   224 LGVNYLDVTDTHTS-----------SETLIFK-GCTVDPYLFENFNTI-DGDILSAKFKAFKFPD 275

  Fly  1239 SNFLVFEATVRSCREGCQPAYCPGPAGRQEPSFGRRRRSLNTTEIPEPEALA-------LEGSSQ 1296
            |:::.|.|||..|.:.|....|    ...:..||||:|.:::.......:||       :||.::
  Fly   276 SSYVQFRATVNVCLDKCLGTQC----SNNQVGFGRRKREISSANKVYEISLAMFLQVQDIEGVNK 336

  Fly  1297 LEASTLD----EVTVVNSTTVSATLGQVPLNET 1325
            .|...|:    |:.:.|......:.|...:.:|
  Fly   337 NEVLQLEEKLRELKLANQRLARNSRGNFAMEQT 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nompANP_524831.2 PAN_AP_HGF 150..231 CDD:238532
PAN_AP_HGF 244..>303 CDD:238532
PAN_AP_HGF 349..424 CDD:238532
PHA03247 <579..907 CDD:223021
PAN_AP_HGF 914..1011 CDD:238532
ZP 1025..1264 CDD:214579 74/284 (26%)
qsmNP_652049.1 ZP 30..298 CDD:214579 74/285 (26%)
Blue background indicates that the domain is not in the aligned region.

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