DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtd and sky

DIOPT Version :9

Sequence 1:NP_001246928.1 Gene:mtd / 45467 FlyBaseID:FBgn0013576 Length:1344 Species:Drosophila melanogaster
Sequence 2:NP_001260649.1 Gene:sky / 35359 FlyBaseID:FBgn0032901 Length:607 Species:Drosophila melanogaster


Alignment Length:261 Identity:73/261 - (27%)
Similarity:124/261 - (47%) Gaps:39/261 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1111 SDLTRESWELIKA------PFAKTYKIIKTASHAASHDLEMLGGEV---LSMSTDEYRKTSLFAT 1166
            |.||..|.:|||:      |.:::...|:..||..: ..|.|..|.   |...:..:|..::.. 
  Fly   357 SVLTSGSKQLIKSRSSDNLPTSQSQVNIQMMSHTLT-IREKLHSESCRNLGEKSPGHRAIAMGV- 419

  Fly  1167 GSFDLDFPIPDLIGKTEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLES 1231
                  :||.:|  |::....|....|.|.||.|...|...|:::|.:||.:|.:.|.::.:.| 
  Fly   420 ------YPIHNL--KSQACKNEDLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVRVEQHE- 475

  Fly  1232 PVLIVIEDTEHNVFGALTSC---SLHVSDH------FYGTGESLLYKFNPSFKVFHWTG------ 1281
            |.|::|:...:.||||..|.   ..:|.|.      ::||||:.|:...|....:.|.|      
  Fly   476 PTLLMIKTCNNEVFGAYCSSRWFERNVKDDKGQRQAYFGTGETFLFSLYPERAKYPWVGIEGDKD 540

  Fly  1282 ---ENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPLAPQEDFVIKTLECWAF 1343
               .:..|:..:.:.::||.|:|: .:|:|.::..|::..|.|:.|.||.|..||.|:.||.:.|
  Fly   541 LGHSSELFMAADSKMITIGGGEGQ-AIWMDENIRFGKTDSCKTFNNPPLCPSGDFEIRVLEVYGF 604

  Fly  1344 V 1344
            |
  Fly   605 V 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtdNP_001246928.1 LysM 271..371 CDD:224306
LysM 329..371 CDD:279777
TLDc 1182..1344 CDD:214733 51/179 (28%)
skyNP_001260649.1 RabGAP-TBC 82..293 CDD:382990
TLDc 431..605 CDD:214733 51/175 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 70 1.000 Domainoid score I2657
eggNOG 1 0.900 - - E1_COG5142
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm47037
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.810

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