DRSC/TRiP Functional Genomics Resources

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Protein Alignment mtd and Tbc1d10a

DIOPT Version :9

Sequence 1:NP_001246928.1 Gene:mtd / 45467 FlyBaseID:FBgn0013576 Length:1344 Species:Drosophila melanogaster
Sequence 2:NP_598784.1 Gene:Tbc1d10a / 103724 MGIID:2144164 Length:500 Species:Mus musculus


Alignment Length:578 Identity:110/578 - (19%)
Similarity:176/578 - (30%) Gaps:193/578 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 AKDDASSSSTHDADGASLSGKSSPVERKLSGDESREKDILEGLRPGSPKPGHIER--------VG 431
            ||....:.....|.|.||||..   |....|.::...|.|..|...|...|..||        ||
Mouse     2 AKSSRENGPREPAAGGSLSGTR---ESLAQGPDAATADELSSLGSDSEANGFAERRIDKFGFIVG 63

  Fly   432 GSSQQQQAEE---------EANKSD-----DPVITQRFLKINVRHITDG----------QGVVGG 472
            ....:...||         |:...|     |..:.::..||.:| ...|          |.:.||
Mouse    64 SQGAEGALEEVPLEVLRQRESKWLDMLNNWDKWMAKKHKKIRLR-CQKGIPPSLRGRAWQYLSGG 127

  Fly   473 VLLVTPNAVMFDP---NVSDPLVIEHGPESYGVIAPMELVVNAAI-----FHDIAHMRVAGGAGQ 529
            .:.:..|...||.   :..||..::              |:...:     ||::...|  ||.||
Mouse   128 KVKLQQNPGKFDELDMSPGDPKWLD--------------VIERDLHRQFPFHEMFVSR--GGHGQ 176

  Fly   530 G-----LNSASGDAEKPEIYY---PKPV----------------LVEEDSKELPEQQSLLGEDGN 570
            .     |.:.:  ..:||..|   ..|:                ||:...|.||...|       
Mouse   177 QDLFRVLKAYT--LYRPEEGYCQAQAPIAAVLLMHMPAEQAFWCLVQVCEKYLPGYYS------- 232

  Fly   571 KRLDAEIGSLEIADDQESLCSSTGRDGDAFPKAFDRERVEDSSMEAK----DSAKT--------- 622
            ::|:|      |..|.|.|.|...:......|...|::::......:    ..|:|         
Mouse   233 EKLEA------IQLDGEILFSLLQKVSPVAHKHLSRQKIDPLLYMTEWFMCAFARTLPWSSVLRV 291

  Fly   623 -DALDDEDKKA--GLGLSSTRSTLEERRKSLLDHHWAIPSKDRSSEDEGDNESNVTVDSGARVQD 684
             |....|..|.  .:||            .||.|....|.|.::.:.:.:....:...|...:|:
Mouse   292 WDMFFCEGVKIIFRVGL------------VLLKHALGSPEKLKACQGQYETIEQLRSLSPKIMQE 344

  Fly   685 PHSANSSVSGVPLSQPPVAAAAAAAAVAPASAVVPLPPSGIDLEHLEQLSKQSCYDSGIDIREPV 749
            .......:.                        :|:....|:.|||.||.:.......::.|.  
Mouse   345 AFLVQEVIE------------------------LPVTERQIEREHLIQLRRWQETRGELECRS-- 383

  Fly   750 PNVQPIPKKTVYSDADIVLSSDWVPPKTIVPTHFSESPPRSTILGQSLDAGTGGAGGVRKKTSSV 814
                 :|:   ...|..:|.::..|...:.|:.....||.:.:|.                    
Mouse   384 -----LPR---MHGAKAILDAEPGPRPALQPSPSIRLPPDAALLS-------------------- 420

  Fly   815 SFSVDDEAAQQAQAQSAALAVTDKQADKKNKMLKRLSYPLTWVEGLTGEGGAVPPGGV 872
            |.:...:.||:.|.::...|..||            |..|:....:|..|.|.||.||
Mouse   421 SKAKPHKQAQKEQKRTKTSAQLDK------------SPGLSQATVVTAAGDACPPQGV 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtdNP_001246928.1 LysM 271..371 CDD:224306
LysM 329..371 CDD:279777
TLDc 1182..1344 CDD:214733
Tbc1d10aNP_598784.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..45 13/45 (29%)
TBC 110..313 CDD:214540 46/245 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 396..415 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..500 16/79 (20%)
Binding to the PDZ domain of EBP50. /evidence=ECO:0000250 497..500
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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