DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex1 and MSP1

DIOPT Version :10

Sequence 1:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster
Sequence 2:NP_011542.3 Gene:MSP1 / 852915 SGDID:S000003260 Length:362 Species:Saccharomyces cerevisiae


Alignment Length:255 Identity:77/255 - (30%)
Similarity:127/255 - (49%) Gaps:17/255 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   713 DANEMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASP-LRNQAGVLLYGPPGTGKTYLVSQLAT 776
            |...:..:::.||:.::..|.|.:::|...|.:::.|| |:..:|||||||||.|||.|...||.
Yeast    84 DEINITFQDIGGLDPLISDLHESVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAK 148

  Fly   777 SWNLRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTGVTDRVV 841
            ......||::...::.|:.|:|.:.|..:|:.|...:||::|.||.||...:|......||..:.
Yeast   149 ESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSSTDHEVTATLK 213

  Fly   842 NQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFEALSSTLSL 906
            .:.:|..||:.....|.:|.||:|...:|.|.||  |:.:.....||.:..|.:|...|.....|
Yeast   214 AEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKL 276

  Fly   907 DEC-VDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKLAKKISLKQKHLIES 965
            ||. .|....|..|..::|:|::.:...|.:.|.||.:.|             ::.||:|
Yeast   277 DEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKEYIKQ-------------KRQLIDS 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex1NP_652016.1 PEX-1N 93..168 CDD:462729
CDC48 365..983 CDD:273521 77/255 (30%)
RecA-like_PEX1_r2 728..885 CDD:410934 53/157 (34%)
MSP1NP_011542.3 RecA-like_ATAD1 92..255 CDD:410928 55/164 (34%)
AAA_lid_3 280..319 CDD:465537 10/51 (20%)
Blue background indicates that the domain is not in the aligned region.

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