DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex1 and SEC18

DIOPT Version :10

Sequence 1:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster
Sequence 2:NP_009636.3 Gene:SEC18 / 852372 SGDID:S000000284 Length:758 Species:Saccharomyces cerevisiae


Alignment Length:436 Identity:133/436 - (30%)
Similarity:195/436 - (44%) Gaps:116/436 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 AKDLDLVKFSNLTEGYRKCDL---------------------VQFV---ERAIFYAYRISKTQPL 681
            ||..||.|:|.........|:                     .|||   |..||     |.||.|
Yeast    99 AKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIF-----SPTQYL 158

  Fly   682 ------------LTNDQLIE--SLEHTNSYC----LQGIQSNQ--------RTG--NDADANEMR 718
                        :.|.|.|:  .:|.|::..    .:||.:.|        |.|  |...:|.:|
Yeast   159 IMEFQGHFFDLKIRNVQAIDLGDIEPTSAVATGIETKGILTKQTQINFFKGRDGLVNLKSSNSLR 223

  Fly   719 VEELPGLESV-----------VGVLEEVL------MWPSRY--PTIFNASPLRNQAGVLLYGPPG 764
                |...:|           ||.|::..      .:.||.  |::.....:.:..|:|||||||
Yeast   224 ----PRSNAVIRPDFKFEDLGVGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPG 284

  Fly   765 TGKTYLVSQLATSWNLRIIS-VKGPELLAKYIGQSEENVRNLFN------RARSARPC--VLFFD 820
            ||||.:..::.|..|.:... |.|||:|:||:|.||||:||||.      ||:.....  ::.||
Yeast   285 TGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFD 349

  Fly   821 EFDSLAPKRGH--DSTGVTDRVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLV 883
            |.||:..:||.  |.|||.|.||||||.::|||:.|..:.||..|:|.:|:|.||||.||.:..|
Yeast   350 ELDSVFKQRGSRGDGTGVGDNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQV 414

  Fly   884 ECPLPDAPARVRIFEALSSTL----SLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALA 944
            |..|||...|::||:..:..:    .:.:.|:....|..|.|::||:|:.::.||:..|:.:.: 
Yeast   415 EIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTV- 478

  Fly   945 QFGHEKLAKKISLKQKHLIESFQTTRPSLSASDVAKYHRTYARFTN 990
            ..|  |.|.|::.|                  |:||...|...|.|
Yeast   479 NIG--KGATKLNTK------------------DIAKLKVTREDFLN 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex1NP_652016.1 PEX-1N 93..168 CDD:462729
CDC48 365..983 CDD:273521 130/427 (30%)
RecA-like_PEX1_r2 728..885 CDD:410934 74/186 (40%)
SEC18NP_009636.3 CDC48_N 29..98 CDD:215012
CDC48_2 134..204 CDD:215011 18/74 (24%)
CDC48 <232..>629 CDD:273521 101/294 (34%)
RecA-like_NSF-SEC18_r1-like 240..416 CDD:410912 73/175 (42%)
Blue background indicates that the domain is not in the aligned region.

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