Protein Alignment Pex1 and AtCDC48B

DIOPT Version :10

• Sequence 1: NP_652016.1
• Gene: Pex1 / 45460
• FlyBaseID: FBgn0013563
• Length: 1006
• Species: Drosophila melanogaster
• Sequence 2: NP_190891.1
• Gene: AtCDC48B / 824489
• AraportID: AT3G53230
• Length: 815
• Species: Arabidopsis thaliana
• Alignment Length: 888
• Identity: 226/888 - (25%)
• Similarity: 365/888 - (41%)
• Gaps: 188/888 - (21%)

  Fly   172 KGLTNGTSNGVIEENTKLSRSKTTAQVKDELTEKLTPLTHSSTVSNVKNTIQRNKRQDHMERLKK 236
            ||.....|..::|:....:|......:.|:          :|.||         ...|.||:|
plant    11 KGTKKDFSTAILEKKKAANRLVVDEAINDD----------NSVVS---------LHPDTMEKL-- 54

  Fly   237 DLRRESSRSFEFRVIRGLWREQAQESDVFVNGKHLPEFFDLDLFYCMHTAADKDYYVRVRTVEDD 301
                        ::.||        ..:.:.||...:      ..|:..|             |:
plant    55 ------------QLFRG--------DTILIKGKKRKD------TVCIALA-------------DE 80

  Fly   302 IEDDLPETIHPSIELN----ANLMKLLGIKELERVVLRPKTTVVNFVEKIELFANKKTHYKIMEN 362
            ..|:      |.|.:|    :||...||     .|:...:...|.:..::.:.....|...:..|
plant    81 TCDE------PKIRMNKVVRSNLRVRLG-----DVISVHQCPDVKYGNRVHILPLDDTIEGVSGN 134

  Fly   363 AFKRFVIERTQHKPMLFNQEEVVRLEDDLLVTVGILPEHFR--------YCVV--DAQ-FLKESK 416
            .|..::      ||........||..|..||..|:....|:        ||||  |.: |.:...
plant   135 IFDAYL------KPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEP 193

  Fly   417 IYAADLVR-------PVGEIIKEETPPTSPLSVQDLIQLP-EYDKIVDQVVQELRMNLCLSADNS 473
            |...|..|       .||.:.|:..      .:::|::|| .:.::...:              .
plant   194 IKREDEERLDEVGYDDVGGVRKQMA------QIRELVELPLRHPQLFKSI--------------G 238

  Fly   474 VMRQCNVLLAGASGTGKTVLVERILDQLSRKPDYCHFEFFHGSRSKGRKTESIQKDLRNIFTSCL 538
            |.....:||.|..|:|||::...:.::..     ..|...:|.....:.....:.:||..|....
plant   239 VKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPEIMSKLAGESESNLRKAFEEAE 298

  Fly   539 QHAPAIVVLENLDVLAHAAGEQSSQDGEYYNRMADTVYQLIVQYTTNNAIAVIATVNELQTLNKR 603
            ::||:|:.::.:|.:   |.::....||...|:...:..|:....:...:.|:...|...:::..
plant   299 KNAPSIIFIDEIDSI---APKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 360

  Fly   604 LSSPRGRHVFQTVARLPNLERADREI------------ILRELCSHINVAKDLDLVKFSNLTEGY 656
            |.               ...|.||||            :||....::.:|:|:||.:.|..|.||
plant   361 LR---------------RFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGY 410

  Fly   657 RKCDLVQFVERAIFYAYRISKTQPLLTNDQLIESLEHTNSYCLQGIQSNQRTGND---------A 712
            ...||......|.....| .|...:..:|:.|:: |..||..:.........||.         .
plant   411 VGADLAALCTEAALQCIR-EKMDVIDLDDEEIDA-EILNSMAVSNDHFQTALGNSNPSALRETVV 473

  Fly   713 DANEMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLATS 777
            :...:..|::.|||:|...|:|.:.:|..:|..|....:....|||.|||||.|||.|...:|..
plant   474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

  Fly   778 WNLRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGH---DSTGVTDR 839
            .....||:||||||..:.|:||.|||.:|::||.:.||||||||.||:|.:||:   |:.|..||
plant   539 CQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADR 603

  Fly   840 VVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFEALSSTL 904
            |:||||||:||:...:.|.:|.||:||:::||||||.||:|:|:..||||..:|.:||::.....
plant   604 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKS 668

  Fly   905 SLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKLAKK--------------I 955
            .:.:.||....|..|..::||||..|...:...|::|.:.: ..||..|:              .
plant   669 PVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEK-DIEKERKRAESPEAMEEDEEEIA 732

  Fly   956 SLKQKHLIESFQTTRPSLSASDVAKYHRTYARFTNKEKTSREF 998
            .:|..|..||.:..|.|:|.:|:.||.    .|....:.||.|
plant   733 EIKAGHFEESMKYARRSVSDADIRKYQ----AFAQTLQQSRGF 771

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pex1	NP_652016.1	PEX-1N	93..168	CDD:462729
		CDC48	365..983	CDD:273521	189/674 (28%)
		RecA-like_PEX1_r2	728..885	CDD:410934	78/159 (49%)
AtCDC48B	NP_190891.1	CDC48	30..767	CDD:273521	219/863 (25%)