Protein Alignment Pex1 and CDC48B

DIOPT Version :10

• Sequence 1: NP_652016.1
• Gene: Pex1 / 45460
• FlyBaseID: FBgn0013563
• Length: 1006
• Species: Drosophila melanogaster
• Sequence 2: NP_178463.1
• Gene: CDC48B / 814895
• AraportID: AT2G03670
• Length: 603
• Species: Arabidopsis thaliana
• Alignment Length: 537
• Identity: 147/537 - (27%)
• Similarity: 256/537 - (47%)
• Gaps: 64/537 - (11%)

  Fly   480 VLLAGASGTGKTVLVERILDQ-----LSRKPDYCHFEFFHGSRSKGRKTESIQKDLRNIFTSCLQ 539
            :||.|..|||||.||..::.:     :...|...|       |:...::|.:   ||..|.....
plant    59 LLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVH-------RAHAGESEKV---LREAFAEASS 113

  Fly   540 HA----PAIVVLENLDVLAHAAGEQSSQDGEYYNRMADTVYQLIVQYTTNNA---IAVIATVNEL 597
            ||    |:::.::.:|||......:..||    .|:|..::.|:.....:::   :.|:|:.|.:
plant   114 HAVSDKPSVIFIDEIDVLCPRRDARREQD----VRIASQLFTLMDSNKPSSSAPRVVVVASTNRV 174

  Fly   598 QTLNKRLSSPRGRHVFQTVARLPNLERADREIILRELCSHINVAKDLDLVKFSNLTEGYRKCDLV 662
            ..::..|.. .||  |..:..:......||..||:.....:|:...:||...:....||...||.
plant   175 DAIDPALRR-AGR--FDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGADLE 236

  Fly   663 QFVERAIFYAYRISKTQPLLTND--QLIESLEHTNSYCLQGIQSNQRTGNDADANEMRVEELPGL 725
            .....|...|.:.|....:||:.  ::.:|:          :..:...|...:..::..:::.||
plant   237 ALCREATISASKRSSDSLILTSQDFKIAKSV----------VGPSINRGITVEIPKVTWDDVGGL 291

  Fly   726 ESVVGVLEEVLMWPSRYPTIF---NASPLRNQAGVLLYGPPGTGKTYLVSQLATSWNLRIISVKG 787
            :.:...|::.:.||.::...|   ..||:|   |:||:||||..||.|....|.:......|:..
plant   292 KDLKKKLQQAVEWPIKHSAAFVKMGISPMR---GILLHGPPGCSKTTLAKAAANAAQASFFSLSC 353

  Fly   788 PELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTG----VTDRVVNQLLTEL 848
            .||.:.|:|:.|..:||.|.|||.|.|.::||||.|.:|.|||.:|:.    |.:|:::.||||:
plant   354 AELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEM 418

  Fly   849 DGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFEALSSTLSLDECVDFD 913
            ||:|..:|:.|:|||:||..:|.||:|.||.|.::..|.||..||..|.:..:..::|.:.||..
plant   419 DGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLR 483

  Fly   914 WFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKLAKKISLKQKHLIESFQTTRPSLSASDV 978
            ..|.:|..:|||:::.:...:...:::|.:|         ..::..:|    |||.:.||..:..
plant   484 KIAEETDLFTGAELEGLCRESGTVSLRENIA---------ATAVFNRH----FQTAKSSLKPALT 535

  Fly   979 AKYHRTYARFTNKEKTS 995
            .:...||:.|....|.|
plant   536 IEEVETYSSFRKAAKRS 552

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pex1	NP_652016.1	PEX-1N	93..168	CDD:462729
		CDC48	365..983	CDD:273521	142/523 (27%)
		RecA-like_PEX1_r2	728..885	CDD:410934	65/163 (40%)
CDC48B	NP_178463.1	CDC48	<23..551	CDD:273521	145/534 (27%)