DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex1 and Trip13

DIOPT Version :10

Sequence 1:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster
Sequence 2:NP_081458.1 Gene:Trip13 / 69716 MGIID:1916966 Length:432 Species:Mus musculus


Alignment Length:413 Identity:88/413 - (21%)
Similarity:150/413 - (36%) Gaps:125/413 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   537 CLQHAPAIVVLENLDVLAHAAGEQSSQDGEYYNRMADTVYQLIVQ----------------YTTN 585
            |:..:||:    :::||..:......:|      :..:||:|:.:                :.:.
Mouse    14 CVAESPAV----HVEVLQRSGSTAKKED------IKSSVYRLLNRHNIVFGDYVWTEFDDPFLSR 68

  Fly   586 NAIAVIATVNELQTLNKR---LSS-PRGRHVFQTVARLPNLERADREIILRELCSHINVAKD--L 644
            |..:|.....||:..:.:   ||: ....|:||.....|:.|..|.|      ..:|..|..  |
Mouse    69 NVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEE------TENIIAASHWVL 127

  Fly   645 DLVKFSNLTEGYRKCDLVQFVERAIFYAYRISKTQPLLTNDQLIESLEHTNSYCLQGIQSNQRTG 709
            ...:|..|.:     .||..||                ....|::.:..|..:..:.:.||..|.
Mouse   128 PAAEFHGLWD-----SLVYDVE----------------VKSHLLDYVMTTVLFSDKNVDSNLITW 171

  Fly   710 NDADANEMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQL 774
            |       ||                                     |||:||||||||.|...|
Mouse   172 N-------RV-------------------------------------VLLHGPPGTGKTSLCKAL 192

  Fly   775 ATSWNLR---------IISVKGPELLAKYIGQSEENVRNLFNRARSA---RPCVLF--FDEFDSL 825
            |....:|         :|.:....|.:|:..:|.:.|..:|.:.:..   :..::|  .||.:||
Mouse   193 AQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESL 257

  Fly   826 APKRGHDSTGVTD----RVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECP 886
            ...|.....|...    ||||.:||::|.::....|.::..::..|.:|.|.:....|.:.:. |
Mouse   258 TAARNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFVDRADIKQYIG-P 321

  Fly   887 LPDAPARVRIFEALSSTLSLDEC 909
             |.|.|..:|:  ||....|.:|
Mouse   322 -PSAAAIFKIY--LSCLEELMKC 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex1NP_652016.1 PEX-1N 93..168 CDD:462729
CDC48 365..983 CDD:273521 88/413 (21%)
RecA-like_PEX1_r2 728..885 CDD:410934 40/174 (23%)
Trip13NP_081458.1 McrB 34..>205 CDD:441011 49/247 (20%)
RecA-like_Pch2-like 121..319 CDD:410916 56/262 (21%)
Blue background indicates that the domain is not in the aligned region.

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