Protein Alignment Pex1 and nmd

DIOPT Version :10

• Sequence 1: NP_652016.1
• Gene: Pex1 / 45460
• FlyBaseID: FBgn0013563
• Length: 1006
• Species: Drosophila melanogaster
• Sequence 2: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Alignment Length: 302
• Identity: 79/302 - (26%)
• Similarity: 135/302 - (44%)
• Gaps: 48/302 - (15%)

  Fly   721 ELPGLESVVGVLEEVLMWPSRYPTIFNASPL-RNQAGVLLYGPPGTGKTYLVSQLATSWNLRIIS 784
            ::.||:||:..|.|.::.|.::..:|..|.| :...||||:||||.|||.:....|....:|.|:
  Fly    98 DIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFIN 162

  Fly   785 VKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTGVTDRVVNQLLTELD 849
            :....|..|:.|:|::....:|:.|....||::|.||.||....|..:....|..:..|.:...|
  Fly   163 LDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMMLWD 227

  Fly   850 GVEGLQGVTVI--AATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFEALSSTLSLDECVDF 912
            |:......|||  .||:||:.||.|::|  |:.......||....|..|.:.:..:..:.:.||.
  Fly   228 GLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDL 290

  Fly   913 DWFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKLAKKISLKQKHLIESFQTTR-PSLSAS 976
            :..:..|..::|:|::.:..:|::..:::.:                        |:| ||.:|.
  Fly   291 NRLSKLTNGFSGSDLREMCRNASVYRMRQLI------------------------TSRDPSATAL 331

  Fly   977 DVAKYHRTYARFT-------------NKEKTSREFVAKRATL 1005
            |     |...|.|             :|..||..|:..|..|
  Fly   332 D-----RNNVRITMDDLLGSHLKIKESKMHTSSLFLENRIEL 368

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pex1	NP_652016.1	PEX-1N	93..168	CDD:462729
		CDC48	365..983	CDD:273521	70/265 (26%)
		RecA-like_PEX1_r2	728..885	CDD:410934	51/159 (32%)
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	54/166 (33%)
		AAA_lid_3	287..323	CDD:465537	6/59 (10%)