DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex1 and trip13

DIOPT Version :10

Sequence 1:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster
Sequence 2:NP_956876.1 Gene:trip13 / 393554 ZFINID:ZDB-GENE-040426-1488 Length:424 Species:Danio rerio


Alignment Length:375 Identity:84/375 - (22%)
Similarity:146/375 - (38%) Gaps:93/375 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   611 HVFQTVARLPNLERAD-REIILRELCSHINVAKDLDLVKFSN--LTE-----------GYRKCDL 661
            |:...|......:|:| |..:|..|..|..|.:....:.|.|  ||:           |.:..||
Zfish    19 HIEVHVKSQSTAKRSDVRTHVLSLLDRHSTVLRSFKWMDFDNEFLTKNVESVTIADVTGPKLVDL 83

  Fly   662 VQFVERAIFYAYRISKTQPLLTNDQLIESLEHTNSYCLQGIQSNQRTGNDADANEMRVEELPGL- 725
            .  |.....:.:.::...|...|.:..|.|...|.:.|..:                  |..|: 
Zfish    84 K--VHNLCIHIFTLNDDSPSTLNLEEEEELSAANLWLLPAV------------------EFHGVW 128

  Fly   726 ESVV---GVLEEVLMWPSRYPTIF------NASPLRNQAGVLLYGPPGTGKTYLVSQLATSWNLR 781
            ||::   |:..::|.:.|  .|||      :::.:.....|||:||||||||.|...||...::|
Zfish   129 ESLIYEEGIKTQLLDYVS--TTIFFSDKNVDSNLIAWNRVVLLHGPPGTGKTSLCKGLAQKLSIR 191

  Fly   782 I---------ISVKGPELLAKYIGQSEENVRNLFNRARSA---RPCVLF--FDEFDSLAPKRGHD 832
            :         :.:....|.:|:..:|.:.|..:|.:.:..   :..::|  .||.:||...|...
Zfish   192 LSDRYAHSQFVEINSHSLFSKWFSESGKLVTKMFQKIQELIDDKDALVFVLIDEVESLTAARSAA 256

  Fly   833 STGVTD----RVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPAR 893
            ..|...    ||||.:||:||.::....|.::..::..|.:|.|.:....|.:.:     ..|:.
Zfish   257 QAGTEPSDAIRVVNSVLTQLDQIKRHPNVVILTTSNVTEKIDLAFVDRADIKQYI-----GPPSA 316

  Fly   894 VRIFEALSSTL----------------SLDECVDFDWFAGKTANYTGADI 927
            ..||....|:|                ||:|.        :|.|:..:|:
Zfish   317 KAIFNIYLSSLEELMKRQIIYPRQQLVSLEEL--------ETMNFMESDV 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex1NP_652016.1 PEX-1N 93..168 CDD:462729
CDC48 365..983 CDD:273521 84/375 (22%)
RecA-like_PEX1_r2 728..885 CDD:410934 46/183 (25%)
trip13NP_956876.1 RecA-like_Pch2-like 113..311 CDD:410916 52/217 (24%)
Blue background indicates that the domain is not in the aligned region.

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