DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pex1 and nsfa

DIOPT Version :10

Sequence 1:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster
Sequence 2:XP_021325418.1 Gene:nsfa / 368483 ZFINID:ZDB-GENE-030616-37 Length:747 Species:Danio rerio


Alignment Length:468 Identity:127/468 - (27%)
Similarity:197/468 - (42%) Gaps:102/468 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   557 AGEQSSQDGEYYNRMADTVYQLIVQYTTNNAIAVIATVNELQTLNKRL--SSPRGRHVFQTVARL 619
            ||....|:.|..|...|...|.|...|.           |:..|.|:.  |||            
Zfish    70 AGLSIGQEIEVSNYNFDKSRQCIGAMTI-----------EIDFLQKKSTDSSP------------ 111

  Fly   620 PNLERADREIILRELCSHIN---------------------VAKDLDLVKFSNLTEGYRKCDLVQ 663
                 .|.:.:..|...|.|                     :.||::.:. |::.:|.......|
Zfish   112 -----YDSDKMAAEFIQHFNNQSFSVGQQLVFSFCDKLFGLLIKDIEAMD-SSILKGEPASGKKQ 170

  Fly   664 FVERAIFYAYRISKTQPLLTNDQLIESLEHTNSYCLQGIQSNQRTGNDADANEMRVEELPGLESV 728
            .:|..:           |:.|.|:|.....::|..|.|....:.........:...|:: |:..:
Zfish   171 KIEVGL-----------LVGNSQVIFEKSESSSLTLVGKAKTKEARQTIINPDWNFEKM-GIGGL 223

  Fly   729 VGVLEEVL--MWPSRY--PTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLATSWNLRIIS-VKGP 788
            .....::.  .:.||.  |.|......::..|:||:||||.|||.:..|:....|.|... |.||
Zfish   224 DKEFSDIFRRAFASRVFPPDIVEQMGCKHVKGILLFGPPGCGKTLMARQIGKMLNAREPKIVNGP 288

  Fly   789 ELLAKYIGQSEENVRNLFNRARSARP--------CVLFFDEFDSLAPKR--GHDSTGVTDRVVNQ 843
            |:|.||:|:||.|:|.||..|...:.        .::.|||.|::..:|  |..||||.|.||||
Zfish   289 EILNKYVGESEANIRKLFADAEEEQKRLGANSGLHIIIFDELDAICKQRGTGASSTGVHDTVVNQ 353

  Fly   844 LLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRI----------FE 898
            ||:::||||.|..:.||..|:||:|:|.||:|.||.:..:|..|||...||:|          |:
Zfish   354 LLSKIDGVEQLNNILVIGMTNRPDLIDEALMRPGRFEVKMEIGLPDEKGRVQILNIHTAKMREFK 418

  Fly   899 ALSSTLSLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKLAKKISLKQKHLI 963
            .|:|.:.:.|      .|.:|.||:||:::.::.:|...|:..      |.|....:.:..:. .
Zfish   419 LLASDVDVKE------LAAETKNYSGAELEGLVRAAQSTAMNR------HIKATSTVEVDMER-A 470

  Fly   964 ESFQTTRPSLSAS 976
            |..|.||....||
Zfish   471 EKLQVTRTDFMAS 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex1NP_652016.1 PEX-1N 93..168 CDD:462729
CDC48 365..983 CDD:273521 127/468 (27%)
RecA-like_PEX1_r2 728..885 CDD:410934 66/171 (39%)
nsfaXP_021325418.1 CDC48_N 5..85 CDD:426738 5/14 (36%)
CDC48_2 111..183 CDD:215011 13/100 (13%)
CDC48 160..>606 CDD:273521 105/349 (30%)
RecA-like_NSF-SEC18_r1-like 219..395 CDD:410912 67/175 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.