DRSC/TRiP Functional Genomics Resources

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Protein Alignment can and taf5l

DIOPT Version :10

Sequence 1:NP_524827.1 Gene:can / 45432 FlyBaseID:FBgn0011569 Length:942 Species:Drosophila melanogaster
Sequence 2:NP_956146.1 Gene:taf5l / 334055 ZFINID:ZDB-GENE-030131-5987 Length:601 Species:Danio rerio


Alignment Length:652 Identity:165/652 - (25%)
Similarity:268/652 - (41%) Gaps:134/652 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 RSECDIDEAIRTRDGSDFYEDSAQFLE-NMENVSLLVIKEDSVFAD---YEFAVKKLIKLIQSTP 338
            |...|.|.:::....|...|:.|..|. ..|:....|:......||   ||....:|...:|...
Zfish    20 RQYIDTDGSMKGAKLSQTAEEMAASLTVQTESSCANVVSAAPCQADPQQYENQFSRLRSFLQEAE 84

  Fly   339 SHYKYEIYILLYPLLVLTYLQM-------------------MASDKIQKARMLLVRFQDHLDDSY 384
            .....|...:|:||.:..:|.|                   ...|..|||.:.|:|         
Zfish    85 GPLVKEASSVLFPLFLYLHLHMARCGLKGALDSFYSRFHSLFQQDPEQKAIVDLLR--------- 140

  Fly   385 ISRIIKLREI-SKPAEVPNKARKLLAGLE-KVKIEMSEGAFRQLL--LCTEE-----WTRGQQEK 440
              ..:.|::: :.|        ||.|.|: |..:.:::.|:..||  |.:|:     |.      
Zfish   141 --GALTLQDVTTNP--------KLCALLDHKYVVHLTDQAYSYLLRYLQSEDNSAICWV------ 189

  Fly   441 LLSHFQIQPYSEDDKPQQRFAIGQPLLEPIWYGAPEPLHKKDFAARPFFQKRRKKRSEPQLSDNL 505
            |.:|.|::..:......|.:..|      :..|.........:|:        ...||.  ::.|
Zfish   190 LTAHLQVEVTAAQRTDYQLYGAG------VGTGNTSSSSSSTWAS--------VDGSEG--AERL 238

  Fly   506 HLP---PVNRVYNPIPNKMDLLHMKSDEQYRMKLDRNNLPSTYLYTTSPSDEVVICATFSEGNSM 567
            .:|   |.|..  .:.|..|.:.       |::....:|.:...|....:::::..|..|..:.:
Zfish   239 EVPAGLPQNEA--ALENLQDCIK-------RVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSRL 294

  Fly   568 LALGTVSSKVYVFSLKPSKLVQVKAAQWLKNLDTGMAGVDKDMIDPIKKFTR------------- 619
            ||.|..:|.|.::||:..||               .||..|..:..|:....             
Zfish   295 LAAGFDNSAVKLWSLRARKL---------------KAGPHKADVSKIRLACDVLEEEADDEDASG 344

  Fly   620 ---RTLYGHQGPVYGCSFNPEDRFLITCSEDFSVRLWCLLSWSCVVIFSGHLAPVCFVVFAPRGY 681
               :||.||.||||..:|..:...|::||||.:||.|.|.|::..|::.||..||..|..:|...
Zfish   345 SEIKTLRGHSGPVYRTAFLTDASGLLSCSEDSTVRYWDLKSFTNTVLYRGHAYPVWDVDVSPCSL 409

  Fly   682 YFATASDDCTARVWMQDNTKPARILQGHLAELGVCLFHPNRHYMATGSADCTVRIWDIVKAVQVR 746
            ||:|||.|.|||:|....|.|.|:..|||:::....||||.:|:||||.|.|||:|...:...||
Zfish   410 YFSTASHDRTARLWSFARTYPLRLYAGHLSDVDCVKFHPNSNYIATGSTDKTVRLWSTRQGASVR 474

  Fly   747 IFRGHKSRITALIYSICGRYLVSGGDDNLIMIWDTANEILMQFFDHHKASINTMEISLDNNILVV 811
            :|.||:..:..|.:|..|:||.|.|:|..:.:||.|:..|.:....|..:|:::..|.|::::..
Zfish   475 LFTGHRGPVLTLAFSPNGKYLASAGEDQRLKLWDLASGGLFKDLRGHTDTISSLSFSQDSSLVAS 539

  Fly   812 GGQDCQLTLWDFEQVIKNYLNRAKIS--MKNQAGTQESSANNLLVSSFFTKGEPFYMIRFTRRNL 874
            ...|..:.:||    |:|....|...  .....|....|.:|:|            .::|...||
Zfish   540 ASMDNTVRVWD----IRNAHGSAPTDGCSSELIGQYTGSTSNIL------------NVQFMACNL 588

  Fly   875 LL 876
            ||
Zfish   589 LL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
canNP_524827.1 TAF5_NTD2 320..453 CDD:176269 34/163 (21%)
WD40 repeat 591..624 CDD:293791 6/48 (13%)
WD40 619..>823 CDD:238121 79/219 (36%)
WD40 repeat 629..666 CDD:293791 14/36 (39%)
WD40 repeat 672..708 CDD:293791 15/35 (43%)
WD40 repeat 713..749 CDD:293791 16/35 (46%)
WD40 repeat 760..790 CDD:293791 11/29 (38%)
taf5lNP_956146.1 TAF5_NTD2 66..200 CDD:176269 32/158 (20%)
WD40 <269..553 CDD:441893 97/302 (32%)
WD40 repeat 357..394 CDD:293791 14/36 (39%)
WD40 repeat 400..436 CDD:293791 15/35 (43%)
WD40 repeat 441..477 CDD:293791 16/35 (46%)
WD40 repeat 484..519 CDD:293791 12/34 (35%)
WD40 repeat 525..572 CDD:293791 10/50 (20%)

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