DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Aldh-III and aldh16a1

DIOPT Version :9

Sequence 1:NP_724562.2 Gene:Aldh-III / 45398 FlyBaseID:FBgn0010548 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001039089.1 Gene:aldh16a1 / 733905 XenbaseID:XB-GENE-5726619 Length:829 Species:Xenopus tropicalis


Alignment Length:499 Identity:125/499 - (25%)
Similarity:212/499 - (42%) Gaps:69/499 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 TSQPESQQQQPEQLQSESESDRMANFDDTLQRARLAFSSGKTRNVSFRRKQLENLLRCYEEHENE 109
            |..|.:.:.....:|.|.|     :.:..::.||.||.|........|.:.|.::.|..::|: .
 Frog    61 TKNPATGEALASTVQGEEE-----DVETAVKAARKAFESWSKLPCHVRARYLYSIARTVQKHQ-R 119

  Fly   110 IISALEA-DLRRPKQESLIVETEFMKNDIRHILFQLDEWVQSEKPPKSFVNMMDDVQIYN-DPFG 172
            ::|.:|: |..:|.:|:...:...:   :|| .:....|.|           :.|.::.. .|.|
 Frog   120 LLSVIESMDNGKPIREARDCDVPLV---VRH-FYHHAGWAQ-----------LRDTEMNGWKPLG 169

  Fly   173 VVLVIGAWNYPLQLLLVPVASAIAAGNCVVIKPSEIAANCAKFIADVIPKY-LDNDCYPVVCGGP 236
            |:..|..||:||.||...:..|:|.||.||:||:......|..:|::..:. |....:.||.|..
 Frog   170 VIAAIVPWNFPLMLLTWKICPALAMGNTVVLKPATYTRLTALLLAEICAEAGLPPGVFNVVTGNG 234

  Fly   237 SETAELLNQ-RFDYIFYTGSTRVGKIIHAAANKYLTPTTLELGGKSPCYIDKSVDMRTAVKRILW 300
            :...:|.:. ..|.:.:||||.||:.:..|........:||||||||..:..:.|:.:||:.|:.
 Frog   235 AFGGKLADHPDVDKVAFTGSTEVGRTLRKATAGTGKKLSLELGGKSPFIVFDTSDLDSAVEGIVD 299

  Fly   301 GKLINCGQTCIAPDYILCSKEVQEKFIVEAKDVLKEW-YGENIQSSPDLSRVINANNFQRLLGLM 364
            ....|.||.|.|...:|..:.:.|..|...|..:... .|:::..:.|:..:::....:.:...:
 Frog   300 AIWFNQGQVCSAGSRLLMQESIAEDLIRRLKQRMSHLRLGDSLDKAIDVGALVDETQKKTIEEFV 364

  Fly   365 KSGRVAVG-------GNYDASERFIEPTILVDVKETDPIMEEEIFGPILPIFNVESAYDAIKFIN 422
            :..: |.|       |.......|..||::..|..|...:.||||||:|......:|.:||...|
 Frog   365 EEAQ-AEGADVFQSPGPIPKKGLFYPPTLITGVNTTSRCVREEIFGPVLVAMTFRTAKEAIALGN 428

  Fly   423 AREKPLVIYVFSNSNKLVKEFRRSTTSGGFSSNETIMHCGVDVLP----FGGVGMSGMGRYHGKY 483
            .....|...|::.:..|..|...|..:|      |:...|.::..    |||...||.||..||.
 Frog   429 NTPYGLAASVWTENLPLALEVAISIKAG------TVWVNGHNMFDAAAGFGGYKESGFGRDGGKE 487

  Fly   484 G---------------------FETFTHKKSCLGKDLSPL-GEK 505
            |                     ::||.   :..|.||.|: |:|
 Frog   488 GLYEYVRPSWESRPQPSPGEVNYKTFA---ASYGADLPPIPGQK 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Aldh-IIINP_724562.2 ALDH_F3AB 72..515 CDD:143450 120/472 (25%)
aldh16a1NP_001039089.1 ALDH_F16 21..500 CDD:143429 117/466 (25%)
ALDH-SF 572..>788 CDD:299846
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.