DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Aldh-III and alh-4

DIOPT Version :9

Sequence 1:NP_724562.2 Gene:Aldh-III / 45398 FlyBaseID:FBgn0010548 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001360568.1 Gene:alh-4 / 179026 WormBaseID:WBGene00000110 Length:495 Species:Caenorhabditis elegans


Alignment Length:497 Identity:215/497 - (43%)
Similarity:310/497 - (62%) Gaps:14/497 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 FDDTLQRARLAFSSGKTRNVSFRRKQLENLLRCYEEHENEIISALEADLRRPKQESLIVETEFMK 134
            |.:.::..|..|.:|:|:.|.||::||..|.:..||:...:..|:..||||..:.:.|:|.....
 Worm     3 FTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRRRHESTEILEIGMTI 67

  Fly   135 NDIRHILFQLDEWVQSEKPPKSFVNMMDDVQIYNDPFGVVLVIGAWNYPLQLLLVPVASAIAAGN 199
            .:|.:.|..:|:||:.....|:|...:|...|..||.||||:|..||||:.::|:|:..||||||
 Worm    68 QEIDYFLKNIDDWVKPTHVEKTFTTALDKPVIEKDPKGVVLIISPWNYPVSMILLPMVPAIAAGN 132

  Fly   200 CVVIKPSEIAANCAKFIADVIPKYLDNDCYPVVCGGPSETAELLNQRFDYIFYTGSTRVGKIIHA 264
            .|||||||::.|.|.....:||||.::....||.||..||.:||.:|||:|.|||...|.|||..
 Worm   133 TVVIKPSELSENVAATFEKLIPKYFESKYVTVVNGGIPETTDLLKERFDHILYTGCPPVAKIIMT 197

  Fly   265 AANKYLTPTTLELGGKSPCYIDKSVDMRTAVKRILWGKLINCGQTCIAPDYILCSKEVQEKFIVE 329
            ||.|:|||.|||||||.|..::...|:..:.|||.|||.:||||||:||||||.:..|:.|.:..
 Worm   198 AAAKHLTPVTLELGGKCPVVVEDDADIDISAKRIAWGKWLNCGQTCLAPDYILVNSTVKPKLVAA 262

  Fly   330 AKDVLKEWYGENIQSSPDLSRVINANNFQRLLGLM--KSGRVAVGGNYDASERFIEPTILVDVKE 392
            .:..:.|:|||::::|.|.:|:||..:|.|:.||:  ..|.|.:||..|.::.:|.||:| ||::
 Worm   263 IRKYVNEFYGEDVKASKDYARMINQRHFDRISGLLDKTQGAVLIGGERDRADLYIPPTVL-DVEK 326

  Fly   393 TDPIMEEEIFGPILPIFNVESAYDAIKFINAREKPLVIYVFSNSNKLVKEFRRSTTSGGFSSNET 457
            :||.|.:|||||:|||..|:|..:::::|...||||..|:|:.:...||.....|:|||.:.|:.
 Worm   327 SDPFMHDEIFGPVLPIITVQSFSESLEYIADGEKPLAAYIFTRNEAKVKRLLNETSSGGVTVNDV 391

  Fly   458 IMHCGVDVLPFGGVGMSGMGRYHGKYGFETFTHKKSCLGKDLSPLGEKLSSARYPPYSDRKGSLL 522
            :||..||.|||||||:||||||.|||||:||||:||.|.:..  .||.|.:|||||.|.:|...:
 Worm   392 LMHITVDTLPFGGVGVSGMGRYRGKYGFDTFTHEKSVLHRGF--FGESLLAARYPPLSQQKLDQM 454

  Fly   523 SFLLRKRRPLPNLHLSHVLAIGLGVGLTVLTNYYLQGKLLSK 564
            ..|..||   .:|:|.:|..      |.::...::.|.|..|
 Worm   455 RRLTGKR---ISLNLMNVAT------LPIVMASFVFGMLFQK 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Aldh-IIINP_724562.2 ALDH_F3AB 72..515 CDD:143450 202/444 (45%)
alh-4NP_001360568.1 ALDH_F3-13-14_CALDH-like 5..430 CDD:143406 193/425 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 390 1.000 Domainoid score I406
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 409 1.000 Inparanoid score I1055
Isobase 1 0.950 - 0 Normalized mean entropy S1337
OMA 1 1.010 - - QHG62894
OrthoDB 1 1.010 - - D225045at33208
OrthoFinder 1 1.000 - - FOG0000656
OrthoInspector 1 1.000 - - otm14355
orthoMCL 1 0.900 - - OOG6_100557
Panther 1 1.100 - - LDO PTHR43570
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2145
SonicParanoid 1 1.000 - - X395
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.960

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