DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E5 and nkx6.1

DIOPT Version :9

Sequence 1:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001002475.1 Gene:nkx6.1 / 436748 ZFINID:ZDB-GENE-040718-178 Length:312 Species:Danio rerio


Alignment Length:407 Identity:104/407 - (25%)
Similarity:138/407 - (33%) Gaps:161/407 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PMAPTSPFVSSSSSVAASSTSVSASSTVSASASSKPKLAFSIDSIVGESSTRSAPLRVSVISSPP 77
            |:.|..|.   ||:..|||||.:|:|                      .:....|     :|||.
Zfish    34 PLYPAYPL---SSTGPASSTSPTATS----------------------PNPGGIP-----VSSPG 68

  Fly    78 PRSESPASP-TNTNNSGRRTPRGYIYCRRRDSLDRSRSPQRSPVSRSPSPPNAGGNPAAAGNTAK 141
            .::.|..|. .:.......||.|.     .|.|.|               |:...:||.    ..
Zfish    69 IKTSSGLSALASAQQCAIATPHGI-----NDILSR---------------PSVACSPAG----IL 109

  Fly   142 SGDPSSGTGNPPTLIRPLPLPAPNLALIGNRTSPNAMAVRMAGPPHPPSQPPPFLAAQFQMAAAL 206
            ||.|...:.:||        |.|.|..     ||:|.||.:|..|.|.::               
Zfish   110 SGLPRFSSLSPP--------PPPGLYF-----SPSAAAVAVARYPKPLTE--------------- 146

  Fly   207 AHHHQQQQQQQQQQLPPVPTGPPHGPHPHLPPGQIPLGIFPGGPHPGHPPPHGHHP-FGSAPHLI 270
                                          .||:.|: .:||...    .||.... |..:||  
Zfish   147 ------------------------------LPGRTPI-FWPGVMQ----SPHWRDARFACSPH-- 174

  Fly   271 RDSYPLYPWLLSRHGRIFPRFPGNFLFQPFRKPKRVRTAFSPTQLLKLEHAFEGNHYVVGAERKQ 335
            ::|.     ||.:.|                |.|..|..||..|:..||..||...|:.|.||.:
Zfish   175 QNSV-----LLDKDG----------------KRKHTRPTFSGQQIFALEKTFEQTKYLAGPERAR 218

  Fly   336 LAQGLSLTETQVKVWFQNRRTK-HKRMQQEGGDG-----SDTKSNKGSSSGGGGGGDGEDDAKHD 394
            ||..|.:||:|||||||||||| .||...|....     |:|:..||:|       :.|||    
Zfish   219 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSETERLKGAS-------ENEDD---- 272

  Fly   395 GSQHSYEDAEDPEDEDE 411
              ...|....||..:||
Zfish   273 --DDDYNKPLDPNSDDE 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E5NP_524825.1 Homeobox 307..359 CDD:278475 29/52 (56%)
nkx6.1NP_001002475.1 Homeobox 189..242 CDD:278475 29/52 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.