DRSC/TRiP Functional Genomics Resources

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Protein Alignment E5 and cdx1

DIOPT Version :9

Sequence 1:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_989416.1 Gene:cdx1 / 395055 XenbaseID:XB-GENE-485396 Length:262 Species:Xenopus tropicalis


Alignment Length:263 Identity:67/263 - (25%)
Similarity:98/263 - (37%) Gaps:86/263 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 NRTSPNAMAVRMAGPPHP--PSQPPPFLAAQFQMAAALAHHHQQQQQQQQQQLPPVPTGPPHGP- 232
            |...||.:.       ||  ...|..::.|..|.:...::||          :|.:.:.|.||. 
 Frog    11 NNMYPNPVR-------HPGLNLNPQNYVPAPPQYSDFPSYHH----------VPGINSDPHHGQP 58

  Fly   233 --------------HPHLP--------PGQIPLGIFPGGPHPGHPPPHGHHPFGSAPHLIRDSYP 275
                          ||:.|        |.||...  |...:|..||..|..|    |.|.....|
 Frog    59 GGTWSSYTPSREDWHPYGPGPGASSANPAQISFS--PSDYNPVQPPGPGLLP----PSLNSSVSP 117

  Fly   276 ---------LYPWL--------LSRHGRIFPRFPGNFLFQPFRKPKRVRTAFSPTQLLKLEHAFE 323
                     ||.|:        .:.:|:.             |...:.|..::..|.|:||..|.
 Frog   118 LSPSAQRRNLYEWMRRTGVPTSTNSNGKT-------------RTKDKYRVVYTDHQRLELEKEFH 169

  Fly   324 GNHYVVGAERKQLAQGLSLTETQVKVWFQNRRTKH-----KRMQQEGGDGS---DTKSNKGSSSG 380
            .:.|:....:.:||..|:|||.|||:||||||.|.     |:|||:....|   .|..:.|:::|
 Frog   170 YSRYITIRRKAELAASLALTERQVKIWFQNRRAKERKVNKKKMQQQSQQASTTTPTPPSVGTTAG 234

  Fly   381 GGG 383
            .||
 Frog   235 MGG 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E5NP_524825.1 Homeobox 307..359 CDD:278475 23/56 (41%)
cdx1NP_989416.1 Caudal_act 13..133 CDD:282574 31/142 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..120 21/93 (23%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902 152..173 6/20 (30%)
Homeobox 153..205 CDD:278475 23/51 (45%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902 191..202 8/10 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..262 11/35 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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