DRSC/TRiP Functional Genomics Resources

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Protein Alignment E5 and msx1

DIOPT Version :9

Sequence 1:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001032329.1 Gene:msx1 / 394692 XenbaseID:XB-GENE-490378 Length:275 Species:Xenopus tropicalis


Alignment Length:155 Identity:57/155 - (36%)
Similarity:73/155 - (47%) Gaps:26/155 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 PTGPPHGPHPHLPPGQIPLGIFPGGPHPGHPPPHGHH-PFGSAPHLIRDSY--PLYP----WLLS 282
            |||.|.....|.|    .:|....|..|..|...|:. |.|....|..::.  |..|    |:.|
 Frog    66 PTGSPLAGTSHSP----RVGSLAPGETPNSPISIGNRFPVGGIMKLPEEALVKPESPERSSWIQS 126

  Fly   283 RHGRIFPRF---PGNFLFQP---FRKPK---RVRTAFSPTQLLKLEHAFEGNHYVVGAERKQLAQ 338
                  |||   |...:..|   .||.|   :.||.|:.:|||.||..|....|:..|||.:.:.
 Frog   127 ------PRFSPSPTRRMSPPACTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSS 185

  Fly   339 GLSLTETQVKVWFQNRRTKHKRMQQ 363
            .|:|||||||:||||||.|.||:|:
 Frog   186 SLNLTETQVKIWFQNRRAKAKRLQE 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E5NP_524825.1 Homeobox 307..359 CDD:278475 28/51 (55%)
msx1NP_001032329.1 PTZ00449 <55..>259 CDD:185628 57/155 (37%)
Homeobox 153..207 CDD:365835 28/53 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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